PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G22050.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 344aa    MW: 37297.7 Da    PI: 7.0289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G22050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-091547134
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                     +g W++eEde+l++ + ++G g+W+++++  g +
  OPUNC05G22050.1 15 KGLWSPEEDEKLYNHIIRHGVGCWSSVPKLAG-K 47
                     678***************************99.3 PP
2Myb_DNA-binding52.41.2e-1698141146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++
  OPUNC05G22050.1  98 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 141
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.7061065IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-201095IPR009057Homeodomain-like
SuperFamilySSF466893.88E-71246IPR009057Homeodomain-like
SMARTSM007171.8E-71494IPR001005SANT/Myb domain
PfamPF002492.5E-71550IPR001005SANT/Myb domain
CDDcd001674.24E-71892No hitNo description
SuperFamilySSF466891.1E-2078151IPR009057Homeodomain-like
PROSITE profilePS5129426.03893147IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2696147IPR009057Homeodomain-like
SMARTSM007172.5E-1697145IPR001005SANT/Myb domain
PfamPF002497.5E-1598142IPR001005SANT/Myb domain
CDDcd001674.14E-11100140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRLSCGGVQ AKLRKGLWSP EEDEKLYNHI IRHGVGCWSS VPKLAGKHSN ATPTARSIAI  60
ADLASLIGLI WFWVGRLQRC GKSCRLRWIN YLRPDLKRGS FSQQEEDLIV ALHEILGNRW  120
SQIASHLPGR TDNEIKNFWN SCLKKKLRQR GLDPATHKPI AAAAAAAATS SASVVTQMDE  180
DHKPHGAADG LAANAKQSVF DPFPVTDFGV GFDLGAANMA AALYGGHFDG GKDPDGAGFV  240
ADYSSVLDVS ENLGYGESSS NSSNWTCAEV SNVLDSEVLN WAASAGAGAA AKAEPFADME  300
QQQQHSGYGG GEHQVEDDAT LEHNIFYTYR IKNHWKIRIL TGKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23131475108B-MYB
1h8a_C9e-23914721128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8377890.0CT837789.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN047M16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638185.11e-165myb-related protein Hv33
SwissprotP200271e-108MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A0E0L5900.0A0A0E0L590_ORYPU; Uncharacterized protein
STRINGOPUNC05G22050.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.16e-69myb domain protein 86