PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G23400.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 711aa    MW: 77893.5 Da    PI: 7.2811
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G23400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-24141242199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +
  OPUNC05G23400.1 141 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGD 231
                      99****************************963.3445679************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  OPUNC05G23400.1 232 DGELRLGVRRA 242
                      9999***9996 PP
2Auxin_resp111.39.3e-37267347182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +aha++t+svF+++YnPr s+seF+v+++k++k+l++++svG Rfkm++e+ed+ err++G+++g  d+dp  W++SkW++L
  OPUNC05G23400.1 267 VAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKSLSQPFSVGLRFKMRYESEDATERRYTGIITGSGDTDP-MWHGSKWKCL 347
                      79*********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-40136244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-43136257IPR015300DNA-binding pseudobarrel domain
CDDcd100175.26E-23139241No hitNo description
PROSITE profilePS5086313.493141243IPR003340B3 DNA binding domain
SMARTSM010195.3E-23141243IPR003340B3 DNA binding domain
PfamPF023621.3E-22141242IPR003340B3 DNA binding domain
PfamPF065074.0E-31267347IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MTGIDLNTVE EDEEEAAAAE AADGSSPAPA RTGAVCLELW HACAGPVAPL PRKGSVVVYL  60
PQGHLEHLGD ASAAAAASAV PPHVFCRVVD VTLLADAATD EVYAQLSLVP EKEEVVRRTD  120
DGDGEDGEAI KQRFARMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYSQQRPSQE  180
LVAKDLHGTE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG DDGELRLGVR  240
RAAQLKNGSA FPALYNQCSN LGTLANVAHA VATESVFNIY YNPRLSQSEF IVPYWKFMKS  300
LSQPFSVGLR FKMRYESEDA TERRYTGIIT GSGDTDPMWH GSKWKCLLVR WDDDAEFRRP  360
NRVSPWEIEL TSSVSGSHLS TPHSKRLKPC LPHVNPEYMV PRGGGCPDFA ESAQFHKVLQ  420
GQELLGFKSH GGTAAATSQS CEARHLQYID ERSCSSDASN SILGVPRLGD RAPLGNPGFS  480
YHCSGFGESQ RLQKVLQGQE VFRPYRGTLV DASMGSNGFH QQDGPSAPGV VNKWHAQLHG  540
RAAFHGLPAP ALPSQSSSPP SVLMFQQANS KMPRLEFGHG QLDKHENDRR VRFGPYKGID  600
RREQRIPLQP YPTSGEVIDG QVTVEKSHSP GRHGKDGPDN KAVGTNSCKI FGISLTEKVP  660
ARAELDDGDA NYSLQSLKQV PKSLGNSCAT VHEQRPVVGR VIDISTMDMM I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-118183772361Auxin response factor 1
4ldw_A1e-118183772361Auxin response factor 1
4ldw_B1e-118183772361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712900.0AB071290.1 Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN-like protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881421.10.0auxin response factor 15 isoform X1
SwissprotQ8S9850.0ARFO_ORYSJ; Auxin response factor 15
TrEMBLA0A0E0L5R40.0A0A0E0L5R4_ORYPU; Auxin response factor
STRINGOPUNC05G23380.10.0(Oryza punctata)
STRINGOPUNC05G23400.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-164ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]