PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G23560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 411aa    MW: 43349 Da    PI: 6.7231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G23560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33199256259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  OPUNC05G23560.1 199 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 256
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-35183258IPR003657WRKY domain
SuperFamilySSF1182903.4E-29190258IPR003657WRKY domain
PROSITE profilePS5081131.95193258IPR003657WRKY domain
SMARTSM007743.2E-39198257IPR003657WRKY domain
PfamPF031063.0E-26199256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSGASHDHLQ LGGGGGEGFP FHDELASLFA ERPHNTAMPG MQQQPWSFID YHHLMQESAP  60
TTTPLDYEAF VGEFDDDVAA AAAGPPLEEV KRELVVDGVG LFPGGGAAAA AGPMTPNSMS  120
VSSTTSSGAG GDEESAGKCK KEEGDGDDDG KEGSATTKGD GDGEDKNKKG GGKGKGKGEK  180
RPRQPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTTQKCP VKKRVERSYQ  240
DAAVVITTYE GKHTHPIPAT LRGTAHLLGA AHHHGGLQYH PGHFAAAGHR LPPQPHGATS  300
AIDALGGLLA PPQHLHAMQN QMQLAAASGG ATGSVHTAMQ QMQPDHAGLA AAIITSTTGA  360
STTTAAAPGS ATATTPLRMQ HFMAQDYGLL QDMFIPSSFM HNDVDANNNH R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26189259878Probable WRKY transcription factor 4
2lex_A3e-26189259878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-133AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-133AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637917.11e-152WRKY transcription factor 23
TrEMBLA0A0E0L5T10.0A0A0E0L5T1_ORYPU; Uncharacterized protein
STRINGOPUNC05G23560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-44WRKY DNA-binding protein 71