PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G23690.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 615aa    MW: 65025.8 Da    PI: 7.1611
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G23690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30358416259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  OPUNC05G23690.1 358 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 416
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-33342418IPR003657WRKY domain
SuperFamilySSF1182901.2E-27350418IPR003657WRKY domain
PROSITE profilePS5081129.987352418IPR003657WRKY domain
SMARTSM007749.7E-37357417IPR003657WRKY domain
PfamPF031061.1E-26359416IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MESYVGVKRK NVVVGGDGRE LPVVAPLPSP SSAATVEFPA VGLGYAGMTS TKEAGGYQER  60
RVVVGEMDFF KTTEKRGERK EPPPSLPPAT AANGHAGASP DDLSLNKDDL TINMGLLVGR  120
RRNSGSEESI VDDGGFSSND EEHREDKAAL AVTKAEIGRL SEENKRLKNM LSNVTTKYNS  180
LQMQFVTLMQ QRRSVLAAPI HQHELLDPEK KEQEGNQQHQ HHQQQLIPRQ FISLGSASLQ  240
PDVEAPHSGG GGDICAPSSS NPDTTVPAMM PLPHFDHHNH QIHGGRERCS SPAETDHHRH  300
HQQEQQQQQQ QQLLPSWLPT DKVPRFLPGK GPEPVPEAAT MRKARVSVRA RSDAPMISDG  360
CQWRKYGQKM AKGNPCPRAY YRCTMAAGCP VRKQVQRCAE DRTVLITTYE GNHNHPLPPA  420
AMAMASTTAA AASMLLSGSM PSADGSLMAG SNFLARAVLP CSSTVATISA SAPFPTVTLD  480
LTQTATPPAS STQPPRPEPA QLQAALAEAA RPVALPQLFG QKLYDQSKLS AVQAVAGTKG  540
SDGGALADTV NAATAAIASD PNFTAVLAAA LTSYIGSSSG SGGGGAGGSS GTVQPLMSGG  600
GDSCSRDDKI GEQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21348418877Probable WRKY transcription factor 4
2lex_A1e-21348418877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209860.0AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881266.10.0probable WRKY transcription factor 31
TrEMBLA0A0E0L5U90.0A0A0E0L5U9_ORYPU; Uncharacterized protein
STRINGOPUNC05G23690.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-89WRKY family protein