PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 309aa    MW: 33702.8 Da    PI: 6.3419
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.87e-26133193158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r++ dp +++++Y g+H++
  OPUNC05G24020.1 133 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNATKQVQRADGDPLLFDVVYLGDHTC 193
                      58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-27120195IPR003657WRKY domain
SuperFamilySSF1182901.44E-24127195IPR003657WRKY domain
PROSITE profilePS5081121.264128191IPR003657WRKY domain
SMARTSM007741.3E-39133195IPR003657WRKY domain
PfamPF031065.5E-25134193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVELCGGEGE GQIMLASELA QLRAMARELE AKMDPDKVAA RELCRALASS VDRSIRLAVS  60
CFPPPEHSHH AAGNAGRDAA FKKRQVMIPG HGGFRVRRSP EQCSDMCSVR CRKGMAKVRR  120
QVRVTSVQDT ASLDDGLSWR KYGQKDILGA KYPRAYFRCT HRHTQGCNAT KQVQRADGDP  180
LLFDVVYLGD HTCGQAAAAA SQSAPPQLLP EHASQEQQSQ SSLLAAGTEG IHQQVVEPMA  240
AEAPFLFTST TATGVDDSYF SFISPANSDC QFSSDFSAGS VGVDMDHEAR FEDLFLNTPE  300
FFQSEIQNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-22132193768OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083890.0AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638413.11e-168probable WRKY transcription factor 41
TrEMBLA0A0E0L5Y90.0A0A0E0L5Y9_ORYPU; Uncharacterized protein
STRINGOPUNC05G24020.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.28e-30WRKY family protein