PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24270.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 497aa    MW: 52770.7 Da    PI: 6.295
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.62.8e-111804552374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      v+lL++cA a+++gd ++a   L+  +e+    p+  + + R+ ++f+ ALa+rl+   ++   + pp + +     e+   ++ f+e+ P+lk
  OPUNC05G24270.1  80 VNLLVTCAGAIQAGDYAAAAGSLSDAREIfaKMPTTrTGIGRVLTHFADALAERLFPAFPQ---SAPPPPPP---RGEQRDLFRGFYEAGPYLK 167
                      689*************************98644444499*****************94443...33444444...4555677899********* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+hltaNqaIlea+eg++ vH+iDf ++ G+QWp+L+qaLa Rp+gpp lRiTg+g++++g+++el+ +g rLa+fA++++vpf f+ ++a++l
  OPUNC05G24270.1 168 FAHLTANQAILEAFEGCNSVHVIDFALTDGIQWPSLIQALAVRPGGPPFLRITGIGPHAAGNRDELRDVGLRLAEFARSCNVPFAFRGIAADQL 261
                      *********************************************************9999********************************* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                      + l++++++v pgEa+a+n+vlqlhrll ++ + +     ++d vL+ v s++P+v++vveqeadhn++s+lerf+++l yy+++fdslea   
  OPUNC05G24270.1 262 DGLRPWMFQVAPGEAVAINSVLQLHRLLVDQDAAAAsfpaPIDGVLDWVASMNPRVFTVVEQEADHNKSSLLERFTNSLFYYASMFDSLEAISR 355
                      **************************9855443333366699***********************************************98743 PP

             GRAS 277 res..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                      +     + + + +++l+ ei ++v+ eg++r+erhe++ +W erl++ G++++pl+ +   qa + lr++++ g+ v+e+ g l+l+W++++L+
  OPUNC05G24270.1 356 HGGgdGAGNPLAEAYLQGEIADIVSREGSSRVERHEQMPRWVERLRRGGMTQMPLGPTGLWQAAMQLREFSGAGFGVQENGGFLTLTWHSQRLY 449
                      3334599999************************************************************************************ PP

             GRAS 369 svSaWr 374
                      s+SaWr
  OPUNC05G24270.1 450 SASAWR 455
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.09153435IPR005202Transcription factor GRAS
PfamPF035149.8E-10980455IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDVAAAAAAA AAALANSTNA AAAAAALANG NGSAYHADPA AMYTSLVPGM AVVPGRAPSA  60
VQIEAARRWK ELEKMAVRSV NLLVTCAGAI QAGDYAAAAG SLSDAREIFA KMPTTRTGIG  120
RVLTHFADAL AERLFPAFPQ SAPPPPPPRG EQRDLFRGFY EAGPYLKFAH LTANQAILEA  180
FEGCNSVHVI DFALTDGIQW PSLIQALAVR PGGPPFLRIT GIGPHAAGNR DELRDVGLRL  240
AEFARSCNVP FAFRGIAADQ LDGLRPWMFQ VAPGEAVAIN SVLQLHRLLV DQDAAAASFP  300
APIDGVLDWV ASMNPRVFTV VEQEADHNKS SLLERFTNSL FYYASMFDSL EAISRHGGGD  360
GAGNPLAEAY LQGEIADIVS REGSSRVERH EQMPRWVERL RRGGMTQMPL GPTGLWQAAM  420
QLREFSGAGF GVQENGGFLT LTWHSQRLYS ASAWRATAGK KMMMANVAAD AMEESQNSNT  480
NGGGSSGGHG ALNQIMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4512145542375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0988320.0AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence.
GenBankAK1072560.0AK107256.1 Oryza sativa Japonica Group cDNA clone:002-125-G08, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.10.0DELLA protein SLR1
TrEMBLA0A0E0L6200.0A0A0E0L620_ORYPU; Uncharacterized protein
STRINGOPUNC05G24270.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-89GRAS family protein