PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24410.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 230aa    MW: 25836.4 Da    PI: 10.3074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.53.1e-101101452257
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +  +s+++++eLA++l+L  +qV  WF NrR + k+
  OPUNC05G24410.1 110 HTRLSRKQKKELADRLNLRISQVDAWFRNRRLRSKQ 145
                      6789*****************************996 PP
2HD-ZIP_I/II63.17.1e-211091782089
      HD-ZIP_I/II  20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      ++++L+ ++K+ela +L+l+  qv+ WF nrR R k++ +E+++++Lk+++++lkeen+rL+ +ve+Lr+
  OPUNC05G24410.1 109 NHTRLSRKQKKELADRLNLRISQVDAWFRNRRLRSKQRSTEMECAYLKECFNKLKEENHRLQLKVEQLRS 178
                      6779****************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.004578150IPR001356Homeobox domain
CDDcd000862.45E-6109144No hitNo description
Gene3DG3DSA:1.10.10.603.3E-10109151IPR009057Homeodomain-like
PfamPF000469.9E-8110145IPR001356Homeobox domain
SuperFamilySSF466897.52E-9110154IPR009057Homeodomain-like
PROSITE profilePS5007111.661114146IPR001356Homeobox domain
SMARTSM003401.9E-7144189IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MESTGILNCP SGLKLSVAVP GHALNPFCGK FVMQPNTCKT LISFYRHATK IVVWMGGSGS  60
GCNNENTREL GIHLDLDCPY GREGLPQQGA SMEVQKGEER GGVRHNSSNH TRLSRKQKKE  120
LADRLNLRIS QVDAWFRNRR LRSKQRSTEM ECAYLKECFN KLKEENHRLQ LKVEQLRSTS  180
LQLQLQLHRE RVVTAPTGQQ AGTSAAACIF TSAWPGSNPS RRTWFSPNAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985712e-93AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence.
GenBankAP0149612e-93AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638698.11e-104homeobox-leucine zipper protein HOX3
TrEMBLA0A0E0L6351e-171A0A0E0L635_ORYPU; Uncharacterized protein
STRINGOPUNC05G24410.11e-172(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1906588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.12e-19homeobox-leucine zipper protein 18