PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24610.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 179aa    MW: 18971.2 Da    PI: 9.0419
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.68.1e-303080357
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                     +vrY+eCl+NhAa++Ggh+vDGCgEfmp       a+alkCaACgCHR+FHR++ 
  OPUNC05G24610.1 30 EVRYHECLRNHAAAMGGHVVDGCGEFMPG----DAADALKCAACGCHRSFHRKDD 80
                     79**************************8....3479****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-203179IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.9E-253179IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.6E-253279IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.1873379IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.6E-9141175IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGVAYGRTPP SSSSSPAAGN GAGAGAGAAE VRYHECLRNH AAAMGGHVVD GCGEFMPGDA  60
ADALKCAACG CHRSFHRKDD GQQLRLLVPS PPTPRVPLLM PPPPPPHPHQ QHPYPHPPFP  120
YHHTPSGSGG TTTESSSEER GPPSSSAVAQ GRRKRFRTKF TPEQKEQMLA FAERLSAQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078580.0AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence.
GenBankAC1209880.0AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence.
GenBankAK1113500.0AK111350.1 Oryza sativa Japonica Group cDNA clone:002-181-G06, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639557.11e-74zinc-finger homeodomain protein 6
SwissprotB8AX532e-76ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A0E0L6641e-125A0A0E0L664_ORYPU; Uncharacterized protein
STRINGOPUNC05G24610.11e-126(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.15e-23zinc finger homeodomain 1