PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 108aa    MW: 12317.1 Da    PI: 8.4487
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-072773346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W +   +l+ +a + + ++   +W+ Iar +g g++++++k ++ +
  OPUNC05G24630.1 27 QWPQKQNKLFEQALAVYDKEtpdRWHNIARAVGGGKSAEDVKRYYEM 73
                     58888899**********99************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-62477IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-42781IPR009057Homeodomain-like
SuperFamilySSF466894.19E-102782IPR009057Homeodomain-like
CDDcd001673.27E-52874No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MLSTSLLTSL ASQDLLLDIM AQQARAQWPQ KQNKLFEQAL AVYDKETPDR WHNIARAVGG  60
GKSAEDVKRY YEMLEEDIKH IESGKVPFPA YRCPAAGYQA ERLKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-29281081192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415281e-143AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankCT8363541e-143CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638815.12e-60protein RADIALIS-like 3
SwissprotQ58FS36e-29RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A0E0L6667e-75A0A0E0L666_ORYPU; Uncharacterized protein
STRINGOPUNC05G24630.11e-75(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-31RAD-like 6
Publications ? help Back to Top
  1. Corley SB,Carpenter R,Copsey L,Coen E
    Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73
    [PMID:15790677]
  2. Costa MM,Fox S,Hanna AI,Baxter C,Coen E
    Evolution of regulatory interactions controlling floral asymmetry.
    Development, 2005. 132(22): p. 5093-101
    [PMID:16236768]
  3. Stevenson CE, et al.
    Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8
    [PMID:16511186]
  4. Stevenson CE, et al.
    Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus.
    Proteins, 2006. 65(4): p. 1041-5
    [PMID:17044043]