PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24640.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 110aa    MW: 12483.9 Da    PI: 10.0299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-092470245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g WT+   +++ +a + + ++   +W+ Iar+mg ++++ +++ ++ 
  OPUNC05G24640.1 24 GGWTQRQNKQFECALAVYDKEtpdRWHNIARYMGGTKSADEVRRHFE 70
                     56*****************99************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.4E-82275IPR001005SANT/Myb domain
SuperFamilySSF466891.55E-112481IPR009057Homeodomain-like
PfamPF002491.0E-62470IPR001005SANT/Myb domain
CDDcd001672.08E-62673No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MASAAGSKQQ QPMMMLPWSR GGGGGWTQRQ NKQFECALAV YDKETPDRWH NIARYMGGTK  60
SADEVRRHFE HLVEDVARIE SGRVPFPRYS ASSSSRGADD GNRSRYLKYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-2619110493RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364521e-149CT836452.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639028.13e-62protein RADIALIS-like 3
SwissprotQ1A1737e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0E0L6684e-77A0A0E0L668_ORYPU; Uncharacterized protein
STRINGOPUNC05G24640.16e-78(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-29RAD-like 6