PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24790.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 321aa    MW: 34731.5 Da    PI: 6.7522
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33175232259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s +prsYYrCt ++C vkk+vers++dp++v++tYeg+H+h+
  OPUNC05G24790.1 175 EDGYRWRKYGQKAVKNSSYPRSYYRCTAPRCGVKKRVERSEQDPSMVITTYEGQHTHP 232
                      8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-35159234IPR003657WRKY domain
SuperFamilySSF1182902.88E-29166234IPR003657WRKY domain
PROSITE profilePS5081130.572169234IPR003657WRKY domain
SMARTSM007742.7E-39174233IPR003657WRKY domain
PfamPF031064.8E-27175232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSGPGGGGHG LYEDHPAAGF LPFDHDDDVV GSFFFGRSAA SGGAGAGDGG DDGVGLITPY  60
SSITDYLQGF LQDPVYASSP MGDAAVKHET VVDHASQAAA TPNSSVLSSS SEAAGGDDLR  120
RCKKGRRPED EEEIDDEGSA VQSCKTNKMK NKKGEKKERE PRVAFMTKSE VDHLEDGYRW  180
RKYGQKAVKN SSYPRSYYRC TAPRCGVKKR VERSEQDPSM VITTYEGQHT HPSPVSYHVH  240
RQQQGLMSAR AVMAGAGYPF GAPPLLGFDE ALTTRVTMNQ QQQLSFVPSI HAARPTMPPL  300
HLYTPPQQDL LPSVTGSHHG Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27165234877Probable WRKY transcription factor 4
2lex_A3e-27165234877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095680.0AK109568.1 Oryza sativa Japonica Group cDNA clone:002-130-E04, full insert sequence.
GenBankAY8706000.0AY870600.1 Oryza sativa (japonica cultivar-group) WRKY8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637709.11e-146WRKY transcription factor 23 isoform X2
TrEMBLA0A0E0L6850.0A0A0E0L685_ORYPU; Uncharacterized protein
STRINGOPUNC05G24790.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-42WRKY DNA-binding protein 28