PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G25400.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 981aa    MW: 106453 Da    PI: 8.0924
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G25400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12836880347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
  OPUNC05G25400.1 836 PWSEQEHRLFLAGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 880
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2002.9E-6372404IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561123.28E-75374663IPR011009Protein kinase-like domain
PROSITE profilePS5001134.591390666IPR000719Protein kinase domain
PfamPF000696.4E-40394657IPR000719Protein kinase domain
CDDcd140662.93E-92396662No hitNo description
Gene3DG3DSA:3.30.200.204.4E-22405451No hitNo description
Gene3DG3DSA:1.10.510.103.0E-40452658No hitNo description
PROSITE patternPS001090511523IPR008266Tyrosine-protein kinase, active site
PROSITE profilePS5129416.439829885IPR017930Myb domain
SuperFamilySSF466891.64E-15830886IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-16832883IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-9833876IPR009057Homeodomain-like
SMARTSM007173.8E-10833883IPR001005SANT/Myb domain
CDDcd001674.90E-8836881No hitNo description
PfamPF002491.2E-9836879IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MAVVSGPDKG RGAEAVVVVA VRAAARDISK AAVVWALTHV VQHGDTILLL AVMPPPHNSG  60
KKFWGFPLFA GGCASGHRSV LTQNSDVADL CNQMMLKLRD FYDPNKIITK LKVIPASPGG  120
VATESKRAQA SWVVLDKELK HEEKRCMEEL QCNIVAMKRS RPKVLRLNLV RSPPKESKSP  180
LPPLPELSAS VGETESGIAE QRCSIREPAV TPSSSPESET AFGSTDVGTS SVSSSDPGTS  240
PYSASETNST FKKEATKDNF QHSDVNVSDS ESEASTPPAA SSLQPWMADV LKGSASSRLA  300
GNRPRRTRTP TADALLEKIS KLDLLAEISA IRSRSDLNFR GNVRDVVSLS RSAPPGPPPL  360
CSICQHKTPV FGKPPRWFSY AELELATGGF SQANFLAEGG FGSVHRGVLP DGQAIAVKQY  420
KLASSQGDVE FCSEVEVLSC AQHRNVVMLI GFCVEDKRRL LVYEYICNGS LDSHLYGRNK  480
ETLEWTARQK IAVGAARGLR YLHEECRVGC IIHRDMRPNN ILVTHDFEPL VGDFGLARWQ  540
PDGDMGVETR VIGTFGYLAP EYAQSGQINE KADVYSFGVV LVELVTGRKA VDINRPKGQQ  600
FLTEWARPLL EEYAIDDLID PRLGDRFSEN EVLCMLHAAN LCIRRDPHSR PRMSHVLRIL  660
EGDMVVESGC ASAPCSEAGS RSRRMLLQQE QQSSPAQQDS QILVNGKPQS YVARRIAWDR  720
DMQTSQRAGE KGGSAAGLRL FGVQLHAAAS SPASSSQSYL HKSYSMDCLR LQVSSPSSLA  780
SLLSPPSSSS SPPPSLTSSL LLSIDEGSCE RPAADGYLSD GPHGEATMRE RKKGVPWSEQ  840
EHRLFLAGLE KLGKGDWRGI SRSFVTTRTP TQVASHAQKF FLRHNSAAKK TNNKRRSSLF  900
DMVQDCDSGK SLASSHCTNN ISASLSLKVS HQKSADSAWP SSETPSVSEA QQGHGYGSSH  960
HCSPLDLELG MSLSTTPSIG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tl8_A5e-7437866728321BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_D5e-7437866728321BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_G5e-7437866728321BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_H5e-7437866728321BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3uim_A3e-7437866720313BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3ulz_A3e-7437866720313BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680310.0AK068031.1 Oryza sativa Japonica Group cDNA clone:J013130D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639966.10.0inactive protein kinase SELMODRAFT_444075
RefseqXP_015639967.10.0inactive protein kinase SELMODRAFT_444075
RefseqXP_015639968.10.0inactive protein kinase SELMODRAFT_444075
RefseqXP_015639969.10.0inactive protein kinase SELMODRAFT_444075
TrEMBLA0A0E0L6H30.0A0A0E0L6H3_ORYPU; Uncharacterized protein
STRINGOPUNC05G25400.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-34MYB_related family protein