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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC05G25830.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 267aa MW: 29132.6 Da PI: 4.4571 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC05G25830.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.2 | 3e-05 | 242 | 264 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+k+F++ + L++H + H
OPUNC05G25830.1 242 SCKSCSKTFNSEMALQSHSKAkH 264
7*****************98777 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MEFWGLEVKP GQTVKCEPED ERFLHLSQAA LGESKKGSDN AVMYVKTDDQ KLVIGTLSAD 60
KFPQIQFDLV FDKEFELSHT SKTANEEEEE KIIPAPKANG KVEGKENERK KQGKTDSSAS 120
KSKAAVNDED DDDSDEDDSE DEDLSPEDDD DDDSSEDDSS EDDEDESDEE ETPKKPETGK 180
RKAAEIVLKT PSSDKKAKIA TPSGDKKGVH VATPHPAKQA SKTPVNDKAK EKSPKSGGGS 240
ISCKSCSKTF NSEMALQSHS KAKHPAK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK072845 | 0.0 | AK072845.1 Oryza sativa Japonica Group cDNA clone:J023142J09, full insert sequence. |
