PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G00270.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 473aa    MW: 50426.9 Da    PI: 5.8115
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G00270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.92.9e-711064721374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.....aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                      lv+ Ll++A+ +++gd + a+++Larl+++       p+g  p+ R+aa +  AL + l         alp+s+    ++  +laa+k++ ++s
  OPUNC06G00270.1 106 LVDHLLDAARLLDAGDSTSAREILARLNHRlpslpPPPHGyPPLLRAAALLRDALLRLLPP------TALPVSSPL--DVPLKLAAHKALADAS 191
                      5789*************************98766667899889*************99999......556555554..599999********** PP

             GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.........egppslRiTgvgspesgskeeleetgerLakfAeelg 173
                      P+++f+ +t  qa l+a+  ++rvH +Dfd++ G++Wp+L+q+La +          ++pp l++T+++sp s +  el+ t e L++fA+elg
  OPUNC06G00270.1 192 PTVQFATFTSTQAFLDALGAARRVHLLDFDVGFGGHWPPLMQELAHQWrraavpvplSPPPILKLTALVSPGSRHPLELHLTYESLTRFAAELG 285
                      *********************************************54433587777778*********************************** PP

             GRAS 174 vpfefnvlvakrledlelee.LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                      +pfef+++v + l++ ++ + L+  p+Ea+aV+l     ++         + ++ L++vk+l+P vvv+v++ +++++ ++ ++ l+ l++++a
  OPUNC06G00270.1 286 IPFEFTAFVFDPLSSASPAMgLSAAPDEAVAVHLPAGSGTFS--------PAPAHLRVVKELRPAVVVCVDHGCERGDLPLPHHALNLLRTCAA 371
                      ****************998779**************999997........56789*************************************** PP

             GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                      l++sl+a  ++ ++  +kvE+++l+++++ +    g++           ++++ +aGF p++ls+ a++qa++llr+++++g++ve+++++l l
  OPUNC06G00270.1 372 LLESLDAA-GASADVVSKVEQFILRPRVERLALGGGDK------LPPPLQSMFASAGFAPLQLSNAAEAQAECLLRRTANHGFHVEKRQAALAL 458
                      *****998.788899*************9998888887......778889******************************************** PP

             GRAS 361 gWkdrpLvsvSaWr 374
                       W++ +LvsvSaWr
  OPUNC06G00270.1 459 WWQRSELVSVSAWR 472
                      *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.27280452IPR005202Transcription factor GRAS
PfamPF035141.0E-68106472IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSSTTIAIGI ATLPEPEPEP TSVLYNRSPS PPTSSSLGSG DPPPPPIEWD AVVDMLAPAP  60
APDTSFLRWI MDAGYADGDA DAFPFDSDLL QLPMPSQQPE PPPQALVDHL LDAARLLDAG  120
DSTSAREILA RLNHRLPSLP PPPHGYPPLL RAAALLRDAL LRLLPPTALP VSSPLDVPLK  180
LAAHKALADA SPTVQFATFT STQAFLDALG AARRVHLLDF DVGFGGHWPP LMQELAHQWR  240
RAAVPVPLSP PPILKLTALV SPGSRHPLEL HLTYESLTRF AAELGIPFEF TAFVFDPLSS  300
ASPAMGLSAA PDEAVAVHLP AGSGTFSPAP AHLRVVKELR PAVVVCVDHG CERGDLPLPH  360
HALNLLRTCA ALLESLDAAG ASADVVSKVE QFILRPRVER LALGGGDKLP PPLQSMFASA  420
GFAPLQLSNA AEAQAECLLR RTANHGFHVE KRQAALALWW QRSELVSVSA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2414847239375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881861.10.0scarecrow-like protein 6
TrEMBLA0A0E0L6S70.0A0A0E0L6S7_ORYPU; Uncharacterized protein
STRINGOPUNC06G00270.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-72GRAS family protein