PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G00330.3

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 81aa MW: 9205.42 Da PI: 8.954

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G00330.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.8e-09	33	67	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 r +WT E++++++a +++ + Wk+I +++g +t OPUNC06G00330.3 33 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTV 67 789***************77.*******.8885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-11	21	69	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.717	31	81	IPR017884	SANT domain
TIGRFAMs	TIGR01557	4.1E-10	31	68	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	8.6E-5	32	69	IPR009057	Homeodomain-like
SMART	SM00717	9.9E-4	32	81	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-7	33	67	IPR001005	SANT/Myb domain
CDD	cd00167	1.83E-5	35	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MTTAPLDSSS PGAGAEDDGG RRVRKPYTIT KSRESWTDPE HDKFLEALQL FDRDWKKIEA 60 YVGSKTVIQP LKLSYHNKLL I

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111672	1e-79	AK111672.1 Oryza sativa Japonica Group cDNA clone:J013156D15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655684.1	2e-33	PREDICTED: protein REVEILLE 6-like
Swissprot	Q8H0W3	3e-27	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A0E0L6T9	4e-53	A0A0E0L6T9_ORYPU; Uncharacterized protein
STRING	OGLUM06G00320.1	2e-42	(Oryza glumipatula)
STRING	ORUFI06G00370.1	2e-42	(Oryza rufipogon)
STRING	ONIVA06G00390.1	2e-42	(Oryza nivara)
STRING	OBART06G00360.1	2e-42	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	1e-29	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]