PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G00440.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 191aa    MW: 20826.7 Da    PI: 10.2325
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G00440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.83.7e-2734137199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+kv tpsdv+k++rlv+pk++ae++        +++ ++ l +ed +g   +W+++++y+ +s++yv+tkGW++Fv++++L +gD+v F    
  OPUNC06G00440.1  34 FEKVVTPSDVGKLNRLVVPKHHAEKYfplgpaARSSPAGTVLCFEDARGgdSTWRFRYSYWSSSQSYVITKGWSRFVRDKRLAAGDTVSFC--- 124
                      99***************************999444557789*****99999***************************************9... PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                      r +++l++  +r+
  OPUNC06G00440.1 125 RAGARLFIDCRRR 137
                      4567778887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-3628146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-2730132IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-1932123No hitNo description
SMARTSM010197.4E-2134138IPR003340B3 DNA binding domain
PfamPF023622.0E-2434137IPR003340B3 DNA binding domain
PROSITE profilePS5086312.35134138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAMTTTIVAW ESRNQQGGGG GGHGGGGERR EHMFEKVVTP SDVGKLNRLV VPKHHAEKYF  60
PLGPAARSSP AGTVLCFEDA RGGDSTWRFR YSYWSSSQSY VITKGWSRFV RDKRLAAGDT  120
VSFCRAGARL FIDCRRRAAA VSPSSPSGAL IKVQLPVVDE KEASCGRRCL RLFGVDLQLR  180
ADAPPALDLQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-45301374113B3 domain-containing transcription factor NGA1
5os9_B2e-45301374113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006160.0AP000616.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0514G12.
GenBankAP0011290.0AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankKC0191720.0KC019172.1 Oryza sativa Indica Group cultivar TN1 insect-resistance protein (BPH29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642534.18e-94B3 domain-containing protein Os06g0107800
SwissprotQ5VS557e-95Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A0E0L6V21e-138A0A0E0L6V2_ORYPU; Uncharacterized protein
STRINGOPUNC06G00440.11e-138(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.12e-43B3 family protein