PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G00450.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18175.8 Da    PI: 10.3727
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G00450.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.1e-271564251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+++ rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s
  OPUNC06G00450.2 15 RIEDTTSRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 64
                     8*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.651666IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-35665IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-29794IPR002100Transcription factor, MADS-box
PROSITE patternPS003500862IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-25828IPR002100Transcription factor, MADS-box
PfamPF003194.5E-261562IPR002100Transcription factor, MADS-box
CDDcd002653.61E-321676No hitNo description
PRINTSPR004041.5E-252843IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-254364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MAAAAGGRRR REMRRIEDTT SRQVTFSKRR KGLLKKASEL SVLCDAEVAL LVFSPRGRFF  60
HFASATSSLE ETIDRYISHT QEAPANKKPR ELTVKQKKLM DKILQLQQQE KILSEENALL  120
RDQGKVQHAP IGAPEREMNH NQHVQDIDVD TELVIGRRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-17779171Myocyte-specific enhancer factor 2A
3mu6_B2e-17779171Myocyte-specific enhancer factor 2A
3mu6_C2e-17779171Myocyte-specific enhancer factor 2A
3mu6_D2e-17779171Myocyte-specific enhancer factor 2A
5f28_A5e-17781274MEF2C
5f28_B5e-17781274MEF2C
5f28_C5e-17781274MEF2C
5f28_D5e-17781274MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1830RRREMRRIEDTTSRQVTFSKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2410551e-122AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642540.11e-73MADS-box transcription factor 50-like isoform X1
RefseqXP_015642541.11e-73MADS-box transcription factor 50-like isoform X1
SwissprotA2Z9Q73e-30MAD56_ORYSI; MADS-box transcription factor 56
SwissprotP0C5B22e-30MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBLA0A0E0L6V41e-113A0A0E0L6V4_ORYPU; Uncharacterized protein
STRINGOPUNC06G00450.21e-114(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-28AGAMOUS-like 20
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Bai Z, et al.
    The impact and origin of copy number variations in the Oryza species.
    BMC Genomics, 2016. 17: p. 261
    [PMID:27025496]
  4. Shibaya T, et al.
    Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice.
    Plant Cell Physiol., 2016. 57(9): p. 1828-38
    [PMID:27318280]
  5. Han Z,Zhang B,Zhao H,Ayaad M,Xing Y
    Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice.
    Front Plant Sci, 2016. 7: p. 1270
    [PMID:27621738]