PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G00590.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 393aa    MW: 41826.3 Da    PI: 5.6172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G00590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llv+++ + G g+W++ ++  g++R++k+c++rw +yl
  OPUNC06G00590.1 15 KGPWTPEEDKLLVEYIGKNGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding50.54.7e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T +E+ l++++++ lG++ W++Ia ++  gRt++++k++w+++l
  OPUNC06G00590.1  68 RGDFTDDEERLIIHLHATLGNK-WSSIATKLK-GRTDNEIKNYWNTHL 113
                      899*******************.********9.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-24765IPR009057Homeodomain-like
PROSITE profilePS5129419.151062IPR017930Myb domain
SuperFamilySSF466899.52E-3012109IPR009057Homeodomain-like
SMARTSM007172.1E-141464IPR001005SANT/Myb domain
PfamPF002492.2E-161562IPR001005SANT/Myb domain
CDDcd001673.70E-111762No hitNo description
PROSITE profilePS5129427.1463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2566117IPR009057Homeodomain-like
SMARTSM007171.9E-1567115IPR001005SANT/Myb domain
PfamPF002497.2E-1568113IPR001005SANT/Myb domain
CDDcd001671.04E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRSPCCEQD ADVKKGPWTP EEDKLLVEYI GKNGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGD FTDDEERLII HLHATLGNKW SSIATKLKGR TDNEIKNYWN THLRKKLLSQ  120
GIDPVTHRPR TDLLAGLPGL LAAANLGGPA AAAAGQLPLD INAIKLQADA AKFQILQGLV  180
RVLATATAAP APTAAPPGID LMTILGATLT ANSGGLLGQQ QLQLSGVDLS RLGQYDGNYN  240
LPPLTNSCAQ TQPMSSMSPD SLLNRISSGI SGDMLSSPEL CHGGDGCLSS PELGQGGPSR  300
SHMTTAPVAA PPPMVAADDQ QCNTPSGGGI SCEETPASST FDGLASLNLD DIDINDMEGC  360
WMTDMLLAEQ LPSWLSTNNA SEMHISKNNT SEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291011722128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641987.10.0transcription factor MYB53
TrEMBLA0A0E0L6W90.0A0A0E0L6W9_ORYPU; Uncharacterized protein
STRINGOPUNC06G00590.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-73myb domain protein 93