PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G00610.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 176aa    MW: 19160.9 Da    PI: 5.0142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G00610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.9e-1758153298
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE.. CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefel 92 
                        v  +s+ + + ++++p +f+  h ++++e +t  + ++ g+sW   +  ++  ++  l +GW+eF+ +n+L++gD +vF+l+  g   + e+
  OPUNC06G00610.1  58 TAVIAKSHLHPKFQMWIPPRFL--HWLPEPEARTAAVLHSGGKSWPTSY--CGDLKMKKLDSGWSEFAVDNRLRVGDACVFELIaiGVaGGLEF 147
                      4556678888899********9..7667778889***************..99999999***********************764466677777 PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                       v+++r
  OPUNC06G00610.1 148 QVQILR 153
                      777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-2052153IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-2152153IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-2055153No hitNo description
PROSITE profilePS5086313.11257155IPR003340B3 DNA binding domain
SMARTSM010194.4E-657155IPR003340B3 DNA binding domain
PfamPF023621.2E-1557153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MQQPDTDPTK LKAKAIIKPK VEPCHDDDEL PAPPPPVSGS DEDWEATTPL TAGNPFFTAV  60
IAKSHLHPKF QMWIPPRFLH WLPEPEARTA AVLHSGGKSW PTSYCGDLKM KKLDSGWSEF  120
AVDNRLRVGD ACVFELIAIG VAGGLEFQVQ ILRGGLPAEV VTSKGVTSDE PIVIVD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069200.0AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643738.11e-96B3 domain-containing protein Os06g0112300
RefseqXP_015643739.11e-96B3 domain-containing protein Os06g0112300
RefseqXP_025882046.11e-96B3 domain-containing protein Os06g0112300
SwissprotQ9LHY91e-97Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A0E0L6X11e-125A0A0E0L6X1_ORYPU; Uncharacterized protein
STRINGOPUNC06G00610.11e-126(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-09related to vernalization1 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]