PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G01050.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 679aa MW: 74097.7 Da PI: 8.5049

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G01050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.1	3.5e-24	428	472	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ OPUNC06G01050.1 428 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 472 79****************************************986 PP
2	QLQ	57	6e-20	354	388	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTaaQ+++L++Q+l+yKyL+a++PvP +Ll++i+ OPUNC06G01050.1 354 VFTAAQWAELEQQALIYKYLVAGVPVPGDLLLPIR 388 5********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00503	7.9E-18	71	186	IPR006011	Syntaxin, N-terminal domain
SuperFamily	SSF47661	5.1E-41	76	287	IPR010989	t-SNARE
Gene3D	G3DSA:1.20.58.70	5.7E-42	76	287	No hit	No description
SMART	SM00397	2.1E-14	227	294	IPR000727	Target SNARE coiled-coil homology domain
PROSITE profile	PS50192	17.57	232	294	IPR000727	Target SNARE coiled-coil homology domain
CDD	cd15845	1.15E-29	236	293	No hit	No description
PROSITE pattern	PS00914	0	238	277	IPR006012	Syntaxin/epimorphin, conserved site
Pfam	PF05739	5.6E-10	268	305	IPR000727	Target SNARE coiled-coil homology domain
SMART	SM00951	4.6E-10	353	389	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.187	354	389	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.6E-14	355	388	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.346	428	472	IPR014977	WRC domain
Pfam	PF08879	9.5E-21	429	471	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006886	Biological Process	intracellular protein transport
GO:0007030	Biological Process	Golgi organization
GO:0007034	Biological Process	vacuolar transport
GO:0009306	Biological Process	protein secretion
GO:0016192	Biological Process	vesicle-mediated transport
GO:0061025	Biological Process	membrane fusion
GO:1900150	Biological Process	regulation of defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0016020	Cellular Component	membrane
GO:0005484	Molecular Function	SNAP receptor activity
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MATRNRTPLY RKYRDALRHV RAPAGAPSSS SSSGGGGGGG PVIEMASLLR SDRPYAPLST 60 DDPSAASSRG AVTVGLPPAW VDVSEEISAN MQRARTKMAE LAKAHAKALM PSFGDGRDDQ 120 RAIEILTHEV TDLLKKSEKR LQKLSMKDSS EDSNVRKNVQ RSLATDLQSL SMEFRKKQST 180 YLKQLRQQKE GQDGVDLEMN MNGSKSTFEL GDDEFEDVGF TEVQMSKLKK SEAFTRERER 240 EIEQVVESVN ELAQIMKDLS VLVIDQGTII DRIDYNIQNV AASVEEGYKQ LQKAERTQKK 300 GGMVMKGKTQ DFAPAKAGHE EAGNATEPKG GSSPSAAAAA VGMGGYQQQR GAAVFTAAQW 360 AELEQQALIY KYLVAGVPVP GDLLLPIRPH SAAAAATYSF SNPAAAPFYH HHHHPSLSYY 420 AYYGKKLDPE PWRCRRTDGK KWRCSKEAHP DSKYCERHMH RGRNRSRKPV ESKTAAPAPQ 480 SQPQLSNVTT ATHDADAPLP SLTVGAKTHG LSLGGAGSSQ FHVDAPSYGS KYSLGAKADV 540 GELSFFSGAS GNTRGFTIDS PTDSSWHSLP SSVPPYPMSK PRDSGLLPGA YSYSHLEPSQ 600 ELGQVTIASL SQEQERRSFG GGAGGMLGNV KHENQPLRPF FDEWPGRRDS WSEMDEERSN 660 QTSFSTTQLS ISIPMPRCD

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MATRNRTPLY RKYRDALRHV RAPAGAPSSS SSSGGGGGGG PVIEMASLLR SDRPYAPLST  60
DDPSAASSRG AVTVGLPPAW VDVSEEISAN MQRARTKMAE LAKAHAKALM PSFGDGRDDQ  120
RAIEILTHEV TDLLKKSEKR LQKLSMKDSS EDSNVRKNVQ RSLATDLQSL SMEFRKKQST  180
YLKQLRQQKE GQDGVDLEMN MNGSKSTFEL GDDEFEDVGF TEVQMSKLKK SEAFTRERER  240
EIEQVVESVN ELAQIMKDLS VLVIDQGTII DRIDYNIQNV AASVEEGYKQ LQKAERTQKK  300
GGMVMKGKTQ DFAPAKAGHE EAGNATEPKG GSSPSAAAAA VGMGGYQQQR GAAVFTAAQW  360
AELEQQALIY KYLVAGVPVP GDLLLPIRPH SAAAAATYSF SNPAAAPFYH HHHHPSLSYY  420
AYYGKKLDPE PWRCRRTDGK KWRCSKEAHP DSKYCERHMH RGRNRSRKPV ESKTAAPAPQ  480
SQPQLSNVTT ATHDADAPLP SLTVGAKTHG LSLGGAGSSQ FHVDAPSYGS KYSLGAKADV  540
GELSFFSGAS GNTRGFTIDS PTDSSWHSLP SSVPPYPMSK PRDSGLLPGA YSYSHLEPSQ  600
ELGQVTIASL SQEQERRSFG GGAGGMLGNV KHENQPLRPF FDEWPGRRDS WSEMDEERSN  660
QTSFSTTQLS ISIPMPRCD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103508	0.0	AK103508.1 Oryza sativa Japonica Group cDNA clone:J033131E19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641605.1	0.0	growth-regulating factor 5 isoform X4
Swissprot	Q6AWY4	0.0	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	A0A0E0L733	0.0	A0A0E0L733_ORYPU; Uncharacterized protein
STRING	OPUNC06G01050.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-27	growth-regulating factor 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]