PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G02400.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 258aa    MW: 27262.9 Da    PI: 9.4998
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G02400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1989143256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee+F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OPUNC06G02400.1  89 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLSLRPRQVEVWFQNRRARTK 143
                      788899***********************************************98 PP
2HD-ZIP_I/II124.55e-4089179192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk
  OPUNC06G02400.1  89 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLSLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 179
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1863146IPR009057Homeodomain-like
SuperFamilySSF466891.37E-1872146IPR009057Homeodomain-like
PROSITE profilePS5007116.5285145IPR001356Homeobox domain
SMARTSM003891.1E-1687149IPR001356Homeobox domain
PfamPF000461.8E-1689143IPR001356Homeobox domain
CDDcd000862.03E-1489146No hitNo description
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PfamPF021835.1E-11145179IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.3E-20145188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MERQGLDLGL SLGLGVTTAA VATWPAARFC LNSGMAEQEV IRRDVAAAAE DERLACSPGS  60
PVSSGSGKRG SGSGDEVDDA GCDGGGGARK KLRLSKDQAA VLEECFKTHH TLTPKQKVAL  120
AKSLSLRPRQ VEVWFQNRRA RTKLKQTEVD CEHLKRWCDQ LADDNRRLHK ELAELRALKA  180
TPAAAPPLTT LTMCLSCKRV ATSSSPSAAA HANAGVLSPA SMFPGHPQFL CGFRDHTGAA  240
SSYGGSSSGL AKAVRAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308960.0CT830896.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014L20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642539.11e-107homeobox-leucine zipper protein HOX28
SwissprotA2Y9311e-108HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-108HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A0E0L7K30.0A0A0E0L7K3_ORYPU; Uncharacterized protein
STRINGOPUNC06G02400.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-44homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]