PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G04000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25620.4 Da    PI: 8.791
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G04000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41e-29757151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
  OPUNC06G04000.1  7 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 57
                     79***********************************************96 PP
2K-box91.21.8e-308517312100
            K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +++ s +qe+ kLk ++e Lq++qR+llGedL +Lslk+L+qLe+q+e sl +iRs Kn+ l++q+ el++ke+ lq++nk+L++k++e
  OPUNC06G04000.1  85 ETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKDLEQLENQIEISLMNIRSSKNQQLFDQVVELKRKEQLLQDANKDLKRKIQE 173
                      45567899*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.17159IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-28121IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-35158IPR002100Transcription factor, MADS-box
CDDcd002659.35E-39274No hitNo description
SuperFamilySSF554552.62E-29374IPR002100Transcription factor, MADS-box
PfamPF003192.9E-25855IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-282136IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-283657IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.92787177IPR002487Transcription factor, K-box
PfamPF014865.8E-2590172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKLKRIE NKISRQVTFA KRRNGLLKKA YELSVLCDAE VALIIFSTRG RLFEFSTSSC  60
MYKTLERYRS CNYNVNSCEA SAALETELSN YQEYLKLKTR VEFLQTTQRN LLGEDLVPLS  120
LKDLEQLENQ IEISLMNIRS SKNQQLFDQV VELKRKEQLL QDANKDLKRK IQETSGENML  180
HISCQDVGPS GHASEANQAF LHPAICDPSL HIGHVGSQVA LRKVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-22681711101Developmental protein SEPALLATA 3
4ox0_B4e-22681711101Developmental protein SEPALLATA 3
4ox0_C4e-22681711101Developmental protein SEPALLATA 3
4ox0_D4e-22681711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641840.0AK064184.1 Oryza sativa Japonica Group cDNA clone:002-104-B10, full insert sequence.
GenBankOSU788900.0U78890.1 Oryza sativa MADS box protein (OsMADS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641896.11e-148MADS-box transcription factor 5
SwissprotA2Y9P01e-149MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-149MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA0A0E0L8881e-164A0A0E0L888_ORYPU; Uncharacterized protein
STRINGOPUNC06G04000.11e-165(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.28e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]