PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G04230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 414aa    MW: 46046.8 Da    PI: 7.4291
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G04230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-06160183123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C  Cg++F+++ +L+rH r  H
  OPUNC06G04230.1 160 YSCAVCGRRFPTRPDLTRHFRQlH 183
                      99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-5158186No hitNo description
Gene3DG3DSA:3.30.160.601.0E-4159186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.256160188IPR007087Zinc finger, C2H2
SMARTSM003552.9E-4160183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162183IPR007087Zinc finger, C2H2
CDDcd061675.23E-10178310No hitNo description
Gene3DG3DSA:3.40.50.10101.3E-4225299IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MPPPRSFLHL AANPIALQAS PLRRARNPHL LLRHRLSLRT DHPSRHAATA SAAGENPSTP  60
GGPIADVEMV RGKDGVWTAR PPTVVVLWDL DNKPPRGPPF PAASALRDAA SLLGRVVSVS  120
AFANRHAFSH VPAWVADERR ERRAMDRAER SGAASPPVPY SCAVCGRRFP TRPDLTRHFR  180
QLHQRERNKK LSRLRSLKGK KRQKFRERFI SGNTKYDDAA RELLTPKVGY GLAAELRRAG  240
VHVRTVSDKP QAADHALKRQ VKHSVACGVD WLVLVSDDSD FTDTVRKARA ADLRTVVVGD  300
GCRALGSVAD IWLPWDRVEN GEVDEEMLRS RTQHMGFRDE EEDEQNDDEF IVDWDTSDLD  360
GVVDDIVATR TKLFGATTMS AFADEEIMDG IFGVGINGGD MLWSSDDEDE DGYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234820.0AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCT8337170.0CT833717.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN087K01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641376.20.0uncharacterized protein LOC4340243
TrEMBLA0A0E0L8B90.0A0A0E0L8B9_ORYPU; Uncharacterized protein
STRINGOPUNC06G04230.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.17e-89C2H2-like zinc finger protein