PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G07940.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 955aa    MW: 108050 Da    PI: 7.7348
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G07940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.41.2e-27832882252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek +++e +s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl
  OPUNC06G07940.1 832 EKALTFELVSQYFYMPITQAARELNVGLTLLKKKCRELGIPRWPHRKMKSL 882
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.7333161IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.2E-937309IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484521.2E-540397IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.5966292IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.22193126IPR002885Pentatricopeptide repeat
PfamPF128549.7E-10126154IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.649127161IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-5129157IPR002885Pentatricopeptide repeat
PfamPF015352.7E-4161187IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.6E-5161188IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.974162188IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.859189224IPR002885Pentatricopeptide repeat
PfamPF015350.015192213IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.923225259IPR002885Pentatricopeptide repeat
PfamPF015353.2E-4228252IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-4228252IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.83270304IPR002885Pentatricopeptide repeat
PfamPF015352.7E-4272301IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.6E-5272302IPR002885Pentatricopeptide repeat
PfamPF015352.1E-6303329IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.215305331IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.778332362IPR002885Pentatricopeptide repeat
PfamPF015351.6E-5334363IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-4334363IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.2E-9361393IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.983363397IPR002885Pentatricopeptide repeat
PfamPF130412.6E-10364410IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-6365398IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.579398428IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.462432462IPR002885Pentatricopeptide repeat
PfamPF015350.01437462IPR002885Pentatricopeptide repeat
PfamPF130412.6E-10463511IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.981464498IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-6467499IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.487499529IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0016501533IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.059535565IPR002885Pentatricopeptide repeat
PfamPF015350.57539563IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.643601635IPR002885Pentatricopeptide repeat
PROSITE profilePS5151918.803818902IPR003035RWP-RK domain
PfamPF020424.9E-21835882IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016554Biological Processcytidine to uridine editing
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MRRWPPPVPA VAHRRATAAA AAGAAPATND LVLRHNRSLA ALLRAGRYDA AWRLFDALPA  60
RSVVTWNSFL AGLARRRDAC AAREFFDAMP VHDAVSWNTL LAAYSSSPRP DHLAAARRLF  120
DEMPQRDVVT WNTLLGAYAR RGLMDEAQRL FDEMPQRNTA SWNTMVTGFF AAGQVVKALD  180
VFDAMPAKDS ASLSTMVSGF TKNGLLHEAE ELLTKRFSAT DMDKAVDAYN TLIVAYGQAG  240
RVSDARRLFD MIPKGQYQHN MLKRKGFERN VVSWNSMMVC YIKAGDVCSA RALFDEMPDK  300
DLVSWNTMIS GYTRASDMKE VQKLFWEMPD PDTVSWNLII QGFMQKGETE HARGFFDRMP  360
ERGTISWNTM ISGYEKNGDY ISSVKLFSKM LEAGEIPDRY TFSSVLAACA SLPMLRLGAQ  420
IHQLVEKSLV PDTAINNALI TMYSRCGALN DAEAIFKQMH TKKDLMSWNA LIGCYEHHGR  480
ATKALQLFKE MRRAKVMPTH ITFVSLLSAC VNAGLVSEGR MVFDTMVHEY GIVARIEHYA  540
ALVNLIGRHG QLDDALEVIN SMPMAPDRSV WGAFLGACTA KKNEPLAQMA AKELSTINPD  600
SSAPYVLIHN LHAHEGKWGS AAGVREEMER QGVYKQPGYS WIDLEGKMHV FISGDTWHPI  660
AQEIFSVLEV RSFAWLCADW QCYNPMNLET NQLTQVKLIA KRNNGIIDKQ ATASKMHKAT  720
NLSHIYTANL NWWPYCTSLW PDNYLLEEEA LFSSLSFPSF HPQPVCSTVM QSNVLQDELG  780
VIFEDDVLKY WDEMELSENK VEKIEKGLPL LYYGDENGAA SKITRDDVRS EEKALTFELV  840
SQYFYMPITQ AARELNVGLT LLKKKCRELG IPRWPHRKMK SLQTLINNVQ VLQEASKANN  900
EDQLRMLVEM LQEERRLLEQ KPYVQLEEKT KRLRQACFKA NYKKRRLLAL ESGEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A6e-55236332427pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035090.0AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01.
GenBankAP0035690.0AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882382.10.0pentatricopeptide repeat-containing protein At1g62260, mitochondrial isoform X1
TrEMBLA0A0E0L9L90.0A0A0E0L9L9_ORYPU; Uncharacterized protein
STRINGOPUNC06G07940.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.15e-37RWP-RK domain-containing protein