PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G08860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 420aa    MW: 46557.2 Da    PI: 8.715
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G08860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.91.5e-2252117171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      rk+ksL+ll+++f+ l+ +++ + v l+++a++L    v  +rRRiYDi+NVLe+++++ +++kn+++w+g
  OPUNC06G08860.1  52 RKQKSLGLLCTNFVGLYDREDVESVGLDDAARRL---GV--ERRRIYDIVNVLESIGMLVRRAKNRYTWIG 117
                      79****************9999************...**..****************************98 PP
2E2F_TDP80.91.1e-25198278171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak+L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  OPUNC06G08860.1 198 RKEKSLGLLTQNFVKLFLNMEIETISLDEAAKRLLGEghaenNMRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWLG 278
                      79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.6E-2548118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.6E-1651116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-2852117IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.6E-2053117IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-24195279IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.9E-34198278IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-21199278IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.22E-13200278IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MPPPPPPEVA PPAPAPAPAP YQPPRLAVDG AGGGGVRVVV GGKPCRHHAY SRKQKSLGLL  60
CTNFVGLYDR EDVESVGLDD AARRLGVERR RIYDIVNVLE SIGMLVRRAK NRYTWIGFGG  120
VPAALAELKE MALRAVSSVA SPSLDETSAA NVSDDEDDDK LDDADGDAES EKLSLSQSID  180
NPSDKPDAPP CKLRSDHRKE KSLGLLTQNF VKLFLNMEIE TISLDEAAKR LLGEGHAENN  240
MRTKVRRLYD IANVLSSLNL IEKTQQVDSR KPAFRWLGQA KRNEGVTVAL PPTKTLPNKR  300
AFGTDLTNID NKRGKLDSTT ENRGKPTQDG GNVFKNLQRQ LGQENRSDFV YGPFHPAGAR  360
KQEHGNRTVQ EKERKSIQDW ENLASSFRPQ YQNPGLNDLF GHYVEAWRSW YSDLTRDRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-37512703228Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200320.0AK120032.1 Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643420.10.0E2F transcription factor-like E2FE
SwissprotQ8LSZ41e-101E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A0E0L9X70.0A0A0E0L9X7_ORYPU; Uncharacterized protein
STRINGOPUNC06G08860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-104DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]