PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G11570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 407aa    MW: 45070.4 Da    PI: 7.5896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G11570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00077117138223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ C k+F++  ++  H+r+H
  OPUNC06G11570.1 117 ECQVCRKRFKNDKSMFGHLRSH 138
                      6*******************99 PP
2zf-C2H211.60.00083261283123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C++C++ Fs++  L  H+  H
  OPUNC06G11570.1 261 YMCKHCNEEFSTHQALGGHMAGH 283
                      89******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.016116143IPR007087Zinc finger, C2H2
SMARTSM003550.093116138IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.42E-7117138No hitNo description
PfamPF139120.002117138IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576673.42E-7256283No hitNo description
Gene3DG3DSA:3.30.160.606.5E-4260287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.596261288IPR007087Zinc finger, C2H2
SMARTSM003550.081261284IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-7261286IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSKCSWLCSL VILQAICFAC QQVACANSLQ VAKVATGQIG GVFVYLQDPS RMSRRARRDE  60
LVDGSSGDED LADHGAPPQP EGEAADHGAP PRGEADEAEA EADVDVDGDG GRSGEVECQV  120
CRKRFKNDKS MFGHLRSHPN RGYKGATPPL KMSSTPPPSS SRRYDRDQRQ LQAPPPTSAS  180
CSNKRKHESV ERAAAGAGAG ELAKSIIMEG GAEGSSRVAV LRDEHEARRK KGKRKLKEPR  240
EAERKVKKDG TSRKEKKRHP YMCKHCNEEF STHQALGGHM AGHHKEKRIL LKEKQLERSL  300
VLEEEPGRSH HLMEKHPESS LIPEKKQLES SSIVLEKKQA DRSLILEEEQ PEVVYQDRID  360
QTVHWQKTER NEGVSYLGGG SNTAPIAQQD SRPPFGFDLN VEAPEQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235RKKGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061640.0AP006164.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1386G10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642158.11e-171uncharacterized protein LOC107278701
TrEMBLA0A0E0LAU70.0A0A0E0LAU7_ORYPU; Uncharacterized protein
STRINGOPUNC06G11570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.18e-07C2H2 family protein