PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G13170.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24044.2 Da    PI: 8.9932
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G13170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.9e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     +rien++ rqvtfskRr g++KKA+EL +LCda+v v++fsstg+ly+ys+
  OPUNC06G13170.1  9 SRIENTTSRQVTFSKRRSGLFKKAKELAILCDAQVGVLVFSSTGRLYDYSN 59
                     59***********************************************95 PP
2K-box561.8e-19601471298
            K-box  12 akaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + + s  + ++++k+  + +  ++  +ll +dL+ L+ ++L++Le+qLe+sl ++R kK++++ eqi+el+kke+ +++en++L++++
  OPUNC06G13170.1  60 SSMRSVIERYQRIKDGQQLMSaSTEAKLLAQDLSGLEWNDLKSLENQLETSLHSVRLKKDQIMAEQIQELRKKENIMHQENMELHREF 147
                      55666778899999999999988889***********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.987161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-30380IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-26323IPR002100Transcription factor, MADS-box
CDDcd002651.14E-39377No hitNo description
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.70355153IPR002487Transcription factor, K-box
PfamPF014862.6E-1770147IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007584Biological Processresponse to nutrient
GO:0010167Biological Processresponse to nitrate
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVRGKTVISR IENTTSRQVT FSKRRSGLFK KAKELAILCD AQVGVLVFSS TGRLYDYSNS  60
SMRSVIERYQ RIKDGQQLMS ASTEAKLLAQ DLSGLEWNDL KSLENQLETS LHSVRLKKDQ  120
IMAEQIQELR KKENIMHQEN MELHREFNML RQESVNLQRK LYGKQDVNGG QGSSVTQNAN  180
TPDDADEIRL ELSQPQLADE KPEAAELRKS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-16169169MEF2C
5f28_B4e-16169169MEF2C
5f28_C4e-16169169MEF2C
5f28_D4e-16169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056469e-92AP005646.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1077E08.
GenBankAP0149629e-92AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126149e-92CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641670.11e-135MADS-box transcription factor 23-like
SwissprotQ6EP495e-62MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0E0LBE31e-153A0A0E0LBE3_ORYPU; Uncharacterized protein
STRINGOPUNC06G13170.11e-154(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1707322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-62AGAMOUS-like 44
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]