PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G13910.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 264aa    MW: 29701.4 Da    PI: 8.4037
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G13910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-091577656
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                     +ft+e++ e+e+l +   n  p+ + ++ LA++           g+  +qV +WFqNr++ ++
  OPUNC06G13910.1 15 RFTQEEVAEMEALLRHlnNGIPDGSVIQSLADRFtastaragkvGVRPKQVWYWFQNRKYSQR 77
                     69***********99554999***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-101483IPR009057Homeodomain-like
CDDcd000860.008721580No hitNo description
Gene3DG3DSA:1.10.10.603.9E-51584IPR009057Homeodomain-like
PROSITE profilePS500719.621579IPR001356Homeobox domain
PfamPF000469.5E-71577IPR001356Homeobox domain
PfamPF167192.6E-37109236IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRPPTPSAG GQGFRFTQEE VAEMEALLRH LNNGIPDGSV IQSLADRFTA STARAGKVGV  60
RPKQVWYWFQ NRKYSQRSRN STKMLPTASG DHKSASTRFS GKNSLEGGQL EFEAKSARDG  120
AWYDVAAFLS HRLSQSGEQE VWVRFSGFGA RDDEWIDVRT CVRQRSHPCV PTECAAVLPG  180
DTILCFQEGK HQALYFDAHV LDAQKRRHDA RGCRCRFLVC YDHDESEEIV PLRKMCRRPE  240
LDYRLQILHE AGAAAAAKDI AVDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-461072401134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-461072401134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-461072401134SHH1 SAWADEE
4iur_B5e-461072401134SHH1 SAWADEE
4iut_A5e-461072401134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-461072401134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-461072401134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-461072401134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-461072401134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-461072401134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996920.0AK099692.1 Oryza sativa Japonica Group cDNA clone:J013073N05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641091.11e-171protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641092.11e-171protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641093.11e-171protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641094.11e-171protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641095.11e-171protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_015641096.11e-171protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ76e-98SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0E0LBN20.0A0A0E0LBN2_ORYPU; Uncharacterized protein
STRINGOPUNC06G13910.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.12e-99sequence-specific DNA binding transcription factors;sequence-specific DNA binding