PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G14680.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19108 Da    PI: 10.5448
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G14680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.81.6e-241967250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rie+k +rqvtf+kRr+g++KKA+ELS+L++a vav++fs+  +ly ++
  OPUNC06G14680.1 19 RIEDKPRRQVTFTKRRTGLFKKASELSILTGASVAVVVFSEAKRLYAFA 67
                     8*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-281069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.0861070IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-241186IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-191232IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241966IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-193247IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-194768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVHPRGRPSK GRQVIEIRRI EDKPRRQVTF TKRRTGLFKK ASELSILTGA SVAVVVFSEA  60
KRLYAFAEPS LDAVLRCYAP APVHDYEPEA LRRAADEAKA EVAAEEARLR DVAGKITQAM  120
AAGRRFWWEA EVDALGEAEL PEFVRALGKL RGAVERRRSD AMLSAQLPKQ P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A2e-171196182MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B2e-171196182MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126144e-75CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619582.12e-64agamous-like MADS-box protein AGL61
TrEMBLA0A0E0LBZ01e-117A0A0E0LBZ0_ORYPU; Uncharacterized protein
STRINGOPUNC06G14680.11e-118(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-21AGAMOUS-like 62