PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G14740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 189aa    MW: 20351.3 Da    PI: 11.1987
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G14740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.8e-172066349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i +k n+qvt skRr g++KKA+ELS L +a +av+ fs+ g+++ +
  OPUNC06G14740.1 20 IGEKGNQQVTSSKRRRGLFKKASELSRLSGASIAVVAFSKAGNVFAF 66
                     66789**************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.0391070IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-201080IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-191069IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-141232IPR002100Transcription factor, MADS-box
PfamPF003192.8E-162166IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-143247IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-144768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRPRGGTSM GKKKIEIRCI GEKGNQQVTS SKRRRGLFKK ASELSRLSGA SIAVVAFSKA  60
GNVFAFGAPS VDAVLRRHVV AGPSTSTTAH AHDDDPEVLE ALKRATDETT AEVAAEEARL  120
DDVAGKITGA IAAGRRFWWE ADVEALGEAE LPEFVRALQK LRGAIVRRRS GAKPTPTRPP  180
RIRSKKLLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039512e-80AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149622e-80AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642715.13e-65agamous-like MADS-box protein AGL61
TrEMBLA0A0E0LBZ71e-132A0A0E0LBZ7_ORYPU; Uncharacterized protein
STRINGOPUNC06G14740.11e-132(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-22M-type_MADS family protein