PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G15030.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 666aa MW: 75358.9 Da PI: 6.4196

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G15030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.7e-07	89	111	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++ ++G Ck+G +C ++H+ OPUNC06G15030.1 89 ADCSYYVEFGSCKFGMSCVYNHP 111 78********************8 PP
2	zf-CCCH	19.8	1.4e-06	131	153	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++r+ CkyG +C+F+H+p OPUNC06G15030.1 131 DCLHYLRFQRCKYGMNCRFNHPP 153 699******************96 PP
3	zf-CCCH	35	2.4e-11	193	218	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t lC++++ G+Ck+G++CkF+H+ OPUNC06G15030.1 193 PGTGLCSYYMNRGICKFGSNCKFHHP 218 5799*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.798	85	113	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.02	85	112	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-5	88	111	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.474	126	154	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.11	126	153	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.37E-5	128	155	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.53	137	152	No hit	No description
SMART	SM00356	2.8E-5	192	219	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.939	192	220	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	193	219	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.1E-9	194	218	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.5E-5	195	217	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF48371	5.18E-28	410	591	IPR016024	Armadillo-type fold
Gene3D	G3DSA:1.25.40.180	1.4E-30	410	571	IPR016021	MIF4G-like domain
SMART	SM00543	2.7E-6	416	646	IPR003890	MIF4G-like, type 3
Pfam	PF02854	9.7E-21	418	581	IPR003890	MIF4G-like, type 3

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MMQILCECCS CAHHSSSTPM ATTSSSAAES SPRASAHPAA ISPPTPLHQH ASTVTLDDRR 60 PASSSAGETE PKAPVAVAVE EYPRRPGLAD CSYYVEFGSC KFGMSCVYNH PAKHAGGCDK 120 LEHPQRPGEH DCLHYLRFQR CKYGMNCRFN HPPDRMPQQQ VYYPWKACHC HHIDGKSEAE 180 QVKLNFIGLP LRPGTGLCSY YMNRGICKFG SNCKFHHPNP GSDHEKWDAS LQTNQISYRV 240 NIYSVLDHGE LNEQSVSSED VLHPGNSRLQ PAEQIRYTRD QLLQLRETVN VPKDIMKLVE 300 DTNVLLHGED ESWAPNEINY VPTLSYKRFN ETDSRDWHSR SLQTSVVVKE EKSWDDIRKA 360 KEPCALGWKE KQFNKQDQIS FQFDSKAQVG PTSALHKAED PWPIRRGTLR EKDEVLETIK 420 GILNLSRPEK FDALKGQLIE AGITRTDILK DVINLILEKA DAEPTLCSMY AQLCSYLSEH 480 LTAFPPGDTH CEEITFKQAL SNKCQEAFEI ARNVRAGISK LTGQDQEIER RDKERLVKHQ 540 TLGNICLIRD LLKGQMVTDK ILHYIVQAVM DCEKFHFEPL ENVDLLNIIF DGVLDSVLAG 600 TETNKVVNVI VGSEKFSISS NDFGIIDKDI NRRNEDPTLQ ESSNDNLNNS MHPQRNYSVD 660 HVMNRD

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MMQILCECCS CAHHSSSTPM ATTSSSAAES SPRASAHPAA ISPPTPLHQH ASTVTLDDRR  60
PASSSAGETE PKAPVAVAVE EYPRRPGLAD CSYYVEFGSC KFGMSCVYNH PAKHAGGCDK  120
LEHPQRPGEH DCLHYLRFQR CKYGMNCRFN HPPDRMPQQQ VYYPWKACHC HHIDGKSEAE  180
QVKLNFIGLP LRPGTGLCSY YMNRGICKFG SNCKFHHPNP GSDHEKWDAS LQTNQISYRV  240
NIYSVLDHGE LNEQSVSSED VLHPGNSRLQ PAEQIRYTRD QLLQLRETVN VPKDIMKLVE  300
DTNVLLHGED ESWAPNEINY VPTLSYKRFN ETDSRDWHSR SLQTSVVVKE EKSWDDIRKA  360
KEPCALGWKE KQFNKQDQIS FQFDSKAQVG PTSALHKAED PWPIRRGTLR EKDEVLETIK  420
GILNLSRPEK FDALKGQLIE AGITRTDILK DVINLILEKA DAEPTLCSMY AQLCSYLSEH  480
LTAFPPGDTH CEEITFKQAL SNKCQEAFEI ARNVRAGISK LTGQDQEIER RDKERLVKHQ  540
TLGNICLIRD LLKGQMVTDK ILHYIVQAVM DCEKFHFEPL ENVDLLNIIF DGVLDSVLAG  600
TETNKVVNVI VGSEKFSISS NDFGIIDKDI NRRNEDPTLQ ESSNDNLNNS MHPQRNYSVD  660
HVMNRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iul_A	2e-14	413	574	20	185	Eukaryotic translation initiation factor 4 gamma 2
4iul_B	2e-14	413	574	20	185	Eukaryotic translation initiation factor 4 gamma 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119453	0.0	AK119453.1 Oryza sativa Japonica Group cDNA clone:001-133-D12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641846.1	0.0	zinc finger CCCH domain-containing protein 42 isoform X1
Swissprot	Q5Z5Q3	0.0	C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A0E0LC33	0.0	A0A0E0LC33_ORYPU; Uncharacterized protein
STRING	OPUNC06G15030.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14330	13	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	5e-29	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]