PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G15040.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1026aa    MW: 116403 Da    PI: 6.1893
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G15040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-083762126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C++f ++G Ck+G +C ++H+
  OPUNC06G15040.1 37 PGEPDCSYFVKFGSCKFGMSCVYNHP 62
                     5789*********************9 PP
2zf-CCCH28.52.7e-0981107127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ ++G Ck+G +C+F+H+p
  OPUNC06G15040.1  81 PGEPDCSYYVKFGSCKFGMNCRFNHPP 107
                      5789*********************96 PP
3zf-CCCH33.76.3e-11147172126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G +CkF H+
  OPUNC06G15040.1 147 PGTGLCSYYMNRGICKFGTNCKFDHP 172
                      5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7133664IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-53862IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.85980108IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-480107IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-682107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694146174IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6147173IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4149171IPR000571Zinc finger, CCCH-type
SuperFamilySSF483712.27E-30333495IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.40.1803.7E-32333494IPR016021MIF4G-like domain
SMARTSM005435.3E-9339610IPR003890MIF4G-like, type 3
PfamPF028548.8E-24342497IPR003890MIF4G-like, type 3
SuperFamilySSF483711.09E-27711892IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.40.1802.7E-30711872IPR016021MIF4G-like domain
SMARTSM005432.7E-6717947IPR003890MIF4G-like, type 3
PfamPF028542.0E-20719880IPR003890MIF4G-like, type 3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MPQDDAWFWG PTVGGGETTK PQPVARGKKV EEHPRRPGEP DCSYFVKFGS CKFGMSCVYN  60
HPDPRQHGGD DKQPEQFPRR PGEPDCSYYV KFGSCKFGMN CRFNHPPRIP VPSQEYFPGN  120
ACHGHHHEGK SKVEQVKLNG LGLPLRPGTG LCSYYMNRGI CKFGTNCKFD HPDPGSDQEK  180
WVDSSNANQV SSQPVNPSFQ LAERLSYTRD QLLQLCQNVD VPKNILELCQ DINVVLTGED  240
KILGFRAEKN HVQTPSYKRF DATDSRDWHS RSAQTHLDNF SEAKEPYALG WKQEQFNKHD  300
QTSNHFDSKA QDGPISALAK AEVPLSIQSC IISEKDEVLT TLKRILNTLT PKMFDLQKGQ  360
LIETKITSAD ILKDVLNLIF EKVVAEPAFC PTYAQLCSYL NQNLTPFPPE DCDGEKITFK  420
QALSNKCQEI FESDRTVRAE IDKLIGPDQE MEQRDKERVV KLETLGNIHF IRALLKKKLI  480
TNKIIDHIVQ AVMDCGKFRF EPLGKVDLLN IIFEGMLDSD SAGAEPNICV NAMIGGNKSF  540
IAANNVEMTY KNVNRRNEEE ILQKSYNEVP NKSMDPQKNY ADAAFSHLTV NVPKDIMKLV  600
EDTNVLLHGE DESWAPNEIN YVPTLSYKRF NETDSRDWHS RSLQTSVVVK EEKSWDDIRK  660
AKEPCALGWK EKQFNKQDQI SFQFDSKAQV GPTSALHKAE DPWPIRRGTL REKDEVLETI  720
KGILNLSRPE KFDALKGQLI EAGITRTDIL KDVINLILEK ADAEPTLCSM YAQLCSYLSE  780
HLTAFPPGDT HCEEITFKQA LSNKCQEAFE IARNVRAGIS KLTGQDQEIE RRDKERLVKH  840
QTLGNICLIR DLLKGQMVTD KILHYIVQAV MDCEKFHFEP LENVDLLNII FDGVLDSVLA  900
GTETNKVVNV IVGSEKFSIS SNDFGIIDKD INRRNEDPTL QESSNDNLNN SMHPQRNYVL  960
NPPPGELARY YLHLKPATTR KKRDREEIVV LSLPDRNESD REEEGNNARR RAANNPSMAT  1020
SLPNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hu3_A2e-1433749310175EIF4GII
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015100.0AK101510.1 Oryza sativa Japonica Group cDNA clone:J033045L14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641849.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_025882269.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ5Z5Q30.0C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0E0LC350.0A0A0E0LC35_ORYPU; Uncharacterized protein
STRINGOPUNC06G15040.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-25zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]