PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G15040.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1009aa    MW: 114712 Da    PI: 6.2492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G15040.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-083762126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C++f ++G Ck+G +C ++H+
  OPUNC06G15040.2 37 PGEPDCSYFVKFGSCKFGMSCVYNHP 62
                     5789*********************9 PP
2zf-CCCH28.52.7e-0981107127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ ++G Ck+G +C+F+H+p
  OPUNC06G15040.2  81 PGEPDCSYYVKFGSCKFGMNCRFNHPP 107
                      5789*********************96 PP
3zf-CCCH33.76.1e-11147172126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G +CkF H+
  OPUNC06G15040.2 147 PGTGLCSYYMNRGICKFGTNCKFDHP 172
                      5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7133664IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-53862IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.85980108IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-480107IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-682107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694146174IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6147173IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:1.25.40.1803.6E-32316477IPR016021MIF4G-like domain
SuperFamilySSF483712.22E-30316478IPR016024Armadillo-type fold
SMARTSM005435.3E-9322593IPR003890MIF4G-like, type 3
PfamPF028548.6E-24325480IPR003890MIF4G-like, type 3
Gene3DG3DSA:1.25.40.1802.6E-30694855IPR016021MIF4G-like domain
SuperFamilySSF483711.06E-27694875IPR016024Armadillo-type fold
SMARTSM005432.7E-6700930IPR003890MIF4G-like, type 3
PfamPF028541.9E-20702863IPR003890MIF4G-like, type 3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MPQDDAWFWG PTVGGGETTK PQPVARGKKV EEHPRRPGEP DCSYFVKFGS CKFGMSCVYN  60
HPDPRQHGGD DKQPEQFPRR PGEPDCSYYV KFGSCKFGMN CRFNHPPRIP VPSQEYFPGN  120
ACHGHHHEGK SKVEQVKLNG LGLPLRPGTG LCSYYMNRGI CKFGTNCKFD HPDPGSDQEK  180
WVDSSNANQV SSQPVNPSFQ LAERLSYTRD QLLQLCQNVD VPKNILELCQ DINVVLTGED  240
KILGFRAEKN HVQTPSYKRF DATDSRDWHS RSAQTHLDNF SEAKEPYALG WKQEQFNKHD  300
QTSNHFDSKA QSCIISEKDE VLTTLKRILN TLTPKMFDLQ KGQLIETKIT SADILKDVLN  360
LIFEKVVAEP AFCPTYAQLC SYLNQNLTPF PPEDCDGEKI TFKQALSNKC QEIFESDRTV  420
RAEIDKLIGP DQEMEQRDKE RVVKLETLGN IHFIRALLKK KLITNKIIDH IVQAVMDCGK  480
FRFEPLGKVD LLNIIFEGML DSDSAGAEPN ICVNAMIGGN KSFIAANNVE MTYKNVNRRN  540
EEEILQKSYN EVPNKSMDPQ KNYADAAFSH LTVNVPKDIM KLVEDTNVLL HGEDESWAPN  600
EINYVPTLSY KRFNETDSRD WHSRSLQTSV VVKEEKSWDD IRKAKEPCAL GWKEKQFNKQ  660
DQISFQFDSK AQVGPTSALH KAEDPWPIRR GTLREKDEVL ETIKGILNLS RPEKFDALKG  720
QLIEAGITRT DILKDVINLI LEKADAEPTL CSMYAQLCSY LSEHLTAFPP GDTHCEEITF  780
KQALSNKCQE AFEIARNVRA GISKLTGQDQ EIERRDKERL VKHQTLGNIC LIRDLLKGQM  840
VTDKILHYIV QAVMDCEKFH FEPLENVDLL NIIFDGVLDS VLAGTETNKV VNVIVGSEKF  900
SISSNDFGII DKDINRRNED PTLQESSNDN LNNSMHPQRN YVLNPPPGEL ARYYLHLKPA  960
TTRKKRDREE IVVLSLPDRN ESDREEEGNN ARRRAANNPS MATSLPNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hu3_A2e-1432047610175EIF4GII
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015100.0AK101510.1 Oryza sativa Japonica Group cDNA clone:J033045L14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641849.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_025882269.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ5Z5Q30.0C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0E0LC360.0A0A0E0LC36_ORYPU; Uncharacterized protein
STRINGOPUNC06G15040.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-25zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]