PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G15050.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 682aa    MW: 76836 Da    PI: 6.3832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G15050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-084469126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C++f ++G Ck+G +C ++H+
  OPUNC06G15050.1 44 PGEPDCSYFVKFGSCKFGMSCVYNHP 69
                     5789*********************9 PP
2zf-CCCH29.11.7e-0988114127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ ++G Ck+G +C+F+H+p
  OPUNC06G15050.1  88 PGEPDCSYYVKFGSCKFGMNCRFNHPP 114
                      5789*********************96 PP
3zf-CCCH34.33.9e-11154179126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G +CkF H+
  OPUNC06G15050.1 154 PGTGLCSYYMNRGICKFGTNCKFDHP 179
                      5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0014370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7134371IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-64569IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.85987115IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-487114IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-689114IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6153180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694153181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6154180IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8155179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4156178IPR000571Zinc finger, CCCH-type
SuperFamilySSF483711.12E-30340502IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.40.1801.3E-32340501IPR016021MIF4G-like domain
SMARTSM005436.1E-11346599IPR003890MIF4G-like, type 3
PfamPF028544.5E-24349504IPR003890MIF4G-like, type 3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MNSHASAMPQ DDAWFWGPTV GGGETTKPQP VARGKKVEEH PRRPGEPDCS YFVKFGSCKF  60
GMSCVYNHPD PRQHGGDDKQ PEQFPRRPGE PDCSYYVKFG SCKFGMNCRF NHPPRIPVPS  120
QEYFPGNACH GHHHEGKSKV EQVKLNGLGL PLRPGTGLCS YYMNRGICKF GTNCKFDHPD  180
PGSDQEKWVD SSNANQVSSQ PVNPSFQLAE RLSYTRDQLL QLCQNVDVPK NILELCQDIN  240
VVLTGEDKIL GFRAEKNHVQ TPSYKRFDAT DSRDWHSRSA QTHLDNFSEA KEPYALGWKQ  300
EQFNKHDQTS NHFDSKAQDG PISALAKAEV PLSIQSCIIS EKDEVLTTLK RILNTLTPKM  360
FDLQKGQLIE TKITSADILK DVLNLIFEKV VAEPAFCPTY AQLCSYLNQN LTPFPPEDCD  420
GEKITFKQAL SNKCQEIFES DRTVRAEIDK LIGPDQEMEQ RDKERVVKLE TLGNIHFIRA  480
LLKKKLITNK IIDHIVQAVM DCGKFRFEPL GKVDLLNIIF EGMLDSDSAG AEPNICVNAM  540
IGGNKSFIAA NNVEMTYKNV NRRNEEEILQ KSYNEVPNKS MDPQKNYADA AFSHLVENEK  600
PTNLESSVGI SRGGCSISEI MELVVDAGAV EGSDEHFIAT LLFIKPEYRE IFLTLDTRQG  660
RLGWLKRMYK VKESVGSCFM DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hu3_A2e-1434450010175EIF4GII
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015100.0AK101510.1 Oryza sativa Japonica Group cDNA clone:J033045L14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641849.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_025882269.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ5Z5Q30.0C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0E0LC370.0A0A0E0LC37_ORYPU; Uncharacterized protein
STRINGOPUNC06G15050.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-25zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]