PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G16400.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 217aa    MW: 22481.8 Da    PI: 4.2804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G16400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-175096252
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa+ +
  OPUNC06G16400.1 50 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAAAR 96
                     69****998.**********843...6*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-255096IPR001471AP2/ERF domain
SMARTSM003805.9E-2250106IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-175096IPR016177DNA-binding domain
PfamPF008474.8E-125096IPR001471AP2/ERF domain
PROSITE profilePS5103219.0855096IPR001471AP2/ERF domain
PRINTSPR003679.6E-115162IPR001471AP2/ERF domain
CDDcd000182.68E-175185No hitNo description
PRINTSPR003679.6E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MPDSELAACS PASSSSASST PPSPGAAAAR CGEKRGRGGG GGGGGGRHPT YRGVRMRAWG  60
KWVSEIREPR KKSRIWLGTF PTAEMAARAH DAAAARAAAM VVDVPAGACC APPSPPMPHA  120
LSGQDQDDDE LEEIVELPPI DDEFDVAAEL VFGVGGATFQ DDPAAEQSWY DQPAAWLQDA  180
GGGGIAVHDE DALGFELDHV WADSVVASGF GALLWNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1440105472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13646RGGGGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036823e-85AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149623e-85AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193635.13e-45ethylene-responsive transcription factor ERF039-like
TrEMBLA0A0E0LCI41e-153A0A0E0LCI4_ORYPU; Uncharacterized protein
STRINGOPUNC06G16400.11e-153(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-19ERF family protein