PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G16860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 548aa    MW: 56273.9 Da    PI: 6.6914
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G16860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-084725091954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  OPUNC06G16860.1 472 FENflRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 509
                      7766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.9E-14280406IPR006563POX domain
PROSITE profilePS5007111.791450513IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-25452525IPR009057Homeodomain-like
CDDcd000861.17E-11453514No hitNo description
SuperFamilySSF466891.71E-15453523IPR009057Homeodomain-like
SMARTSM003895.4E-7453517IPR001356Homeobox domain
PfamPF059201.4E-15470509IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MSTSSNPSYH QLGLDAISCC FFTAGGGGGA EVAPFFGFGF GDVDGEFLGG GGGGGMMMVA  60
SPVAVAGGVG DELACAVSLR RQGSMSEEEV NAAAAAAATA AAESCSTVHS VLPAGSVEFG  120
CGTSSGVTIA QASRMGKLVG EAPCGGGGWI YGGSGIAPFH DAHYLSGFSS GAGAGFSSPF  180
AASSVAAAPA ASELSLRLGA TKCSSPSSMA NASSEVSCSG LTHVSSGGGF GYHQAAAAGG  240
GAALFHPTHG DGAVAAAGEL RQVYHSRAPL HFSQVVSRST VFAHVAQELL NGFVACLLQD  300
VAANAASGTD GGEASPALSS GFSARTTPPE EAASPVGGAR CAVEAQRLRK LLQLMDQKCN  360
QCLEEMQSTA ARFNSMVRSG GGGGGLSAAF AGRAVAAVYR RVRRRVMGQL MAAATARSSS  420
SAALEEEERS WESSFIQKHW AMQQLRRGDQ QSWRPQRGLP EKSVAVLKAW MFENFLRPYP  480
KDSEKDMLAA RSGLSRSQVS NWFINARVRL WKPMIEDMYE ELRKTSGGSD GTAEIEHLSS  540
KDVISLES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037140.0AP003714.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0656E03.
GenBankAP0037620.0AP003762.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0456F09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641753.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_015641754.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_025882414.10.0BEL1-like homeodomain protein 1 isoform X1
TrEMBLA0A0E0LCP50.0A0A0E0LCP5_ORYPU; Uncharacterized protein
STRINGOPUNC06G16860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-47homeobox gene 1