PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G17020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 333aa    MW: 36406.9 Da    PI: 4.7717
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G17020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.41.5e-30391302101
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl k++e++ed++++ ++sw  +  nsfvv+d++ fa ++Lp +Fkh nf+SF+RQLn+YgF+kv+ ++         weF++  F  g+++ll
  OPUNC06G17020.1  39 FLVKTFEMVEDPATDAVVSWGgAARNSFVVWDPHAFAARLLPLHFKHANFSSFLRQLNTYGFRKVSADR---------WEFANVDFLGGQRHLL 123
                      9********************9899******************************************99.........**************** PP

                      XXXXXXX CS
     HSF_DNA-bind  95 ekikrkk 101
                       +i+r++
  OPUNC06G17020.1 124 ANIRRRR 130
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-4935129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-2935129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3236129IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-163962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-2639129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-167890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-1691103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDYSTVKQEE VEVVVLDDDE EAPVPLPAAM GVGVAVAPFL VKTFEMVEDP ATDAVVSWGG  60
AARNSFVVWD PHAFAARLLP LHFKHANFSS FLRQLNTYGF RKVSADRWEF ANVDFLGGQR  120
HLLANIRRRR GAGTGAVSTT RRAVNGGGGG EGEVDRLRRD KEALARELAR LRRQQKEARA  180
QLLDMERRVR GTERRQEQCT AFLARALRNP DVLDNIALRH AAATPVEGRK RRMLGADAAH  240
DGLTFEALAL AAAAVPSSDG TSRSTGAVTT DMIWYELLGE EQAEIDIEVD QLVASAAADM  300
APAASEAEPW EEMGEEEVQE LVQQIDCLAS PSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-203612917120Heat shock factor protein 1
5d5u_B4e-203612926129Heat shock factor protein 1
5d5v_B4e-203612926129Heat shock factor protein 1
5d5v_D4e-203612926129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054560.0AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657062.11e-154PREDICTED: putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-139HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA0A0E0LCR80.0A0A0E0LCR8_ORYPU; Uncharacterized protein
STRINGOPUNC06G17020.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.19e-53heat shock transcription factor A2