PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G17210.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 453aa    MW: 47662 Da    PI: 7.5348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G17210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13258302554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+riN++f++Lr llP++      K +Ka++L  ++eY+ +L
  OPUNC06G17210.1 258 HMISERRRRERINDSFQTLRALLPPD-----SKKDKAAVLASTTEYMDKL 302
                      8899*********************8.....699************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-16255322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16257322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11258302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-13259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-5268302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAGGRACRCV PGWAYKEGAA CMELTEHELA ASASLQVQQQ FYHETGTKMA MFMGCESGEI  60
EVGLSIASAT AAAAVVSELQ QSILEELLQM PPPPSSSSSS LLSLSVGSPE YSSLVRSMAT  120
SVGASAAAAE APSPMHGGLL PPVYGEFPGS DDDAAMAQAM LAVISTSAPP PWRPPRRRAH  180
SSSSPRRATA FKAYNAALSP RARPRPGAPG QRMIKTGISL LSSVYMEMRN QELAAARQRD  240
THVAPPPPPP PTSSQLHHMI SERRRRERIN DSFQTLRALL PPDSKKDKAA VLASTTEYMD  300
KLISQVSELE EKNRQLEMHL AMRSGEGTAA SGGGGGESSS ERVQVDVAIA GSSASASRPD  360
QRREVSIRVA VRAECDVSEL VVAVLARLRE MGGFAVVSVD ARRRSSSSAQ ASLTLRVTAG  420
DVCDETSLKE AVAKAVDSAV AAPPVAPPPP ASP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054600.0AP005460.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0610D01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882299.10.0putative transcription factor bHLH041
TrEMBLA0A0E0LCU50.0A0A0E0LCU5_ORYPU; Uncharacterized protein
STRINGOPUNC06G17210.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-18bHLH family protein