PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G18670.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 567aa    MW: 62051.8 Da    PI: 4.9104
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G18670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-18123170148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed++l ++v+ +G g+W+ + r  g++R++k+c++rw ++l
  OPUNC06G18670.1 123 KGPWTPDEDKRLREYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 170
                      79******************************************9986 PP
2Myb_DNA-binding43.29.4e-14176219146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ +++d+++  G++ W++ a+ ++ gRt++++k++w++
  OPUNC06G18670.1 176 KGPFSKEEQMRIIDLHHFIGNK-WAKMASSLP-GRTDNEIKNFWNT 219
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.459118174IPR017930Myb domain
SuperFamilySSF466892.02E-30120217IPR009057Homeodomain-like
SMARTSM007175.3E-16122172IPR001005SANT/Myb domain
PfamPF002499.3E-17123170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-24124177IPR009057Homeodomain-like
CDDcd001678.14E-12125170No hitNo description
PROSITE profilePS5129414.206175225IPR017930Myb domain
SMARTSM007175.1E-13175223IPR001005SANT/Myb domain
PfamPF002492.1E-12176219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-22178223IPR009057Homeodomain-like
CDDcd001675.25E-9178219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAAHSGPGHE PSSSGVLLLL LASSLLRLVY YSTLLSAAAA PPLYPSSRHR MRVEGSSPLE  60
EEEEAVARLA GSQGESPPML YPSGDGDGGE EEQRGVARAG VRRRGISGGG VHVRMRGRIP  120
LKKGPWTPDE DKRLREYVEA HGEGNWNQVQ RNAGLNRCGK SCRLRWANHL KPDLKKGPFS  180
KEEQMRIIDL HHFIGNKWAK MASSLPGRTD NEIKNFWNTR CKRIQRTGEP LYPKEITHFK  240
LTDLEEMNCE SPDESRGKKR TNEVLQGNGQ SYKEVFFDNL DYSRPENCIC PNSVTPNSLS  300
VDAISPFGSA IATQDQSVPF GSAIVSGHPI LDGNFSTSGT IQRPTNVELP SLQYPNYDFS  360
NNAWSYHDPL GHPIEQVDFM LQSSASGSLR SESLSPSNAG LLDALVHGGH GQGDLANSQG  420
SFDVCVPHVQ CNQVIQSNAF SMSSSSPILG DDLLENSLYT LVGINNNASS LFLDSQPPPL  480
VDSISWRHDV SLEPSLPVCQ FNEELPPSNE QFAKDADDAF GHGGLFDETN LAAAGQGDED  540
DLENPWTSMS GACDIPDFPN DDDRKWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-271192232106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2120750.0AB212075.1 Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641123.10.0transcription factor MYB101
TrEMBLA0A0E0LDB70.0A0A0E0LDB7_ORYPU; Uncharacterized protein
STRINGOPUNC06G18670.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.16e-56myb domain protein 101