PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G18860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 646aa    MW: 70868.8 Da    PI: 6.1092
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G18860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.65.7e-33371425155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      ++rlrWt +LH+rFv+av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYRl
  OPUNC06G18860.1 371 RQRLRWTDDLHDRFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRL 425
                      58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011526.8725122IPR001164Arf GTPase activating protein
SMARTSM001059.8E-459130IPR001164Arf GTPase activating protein
SuperFamilySSF578633.79E-4110125No hitNo description
PfamPF014128.9E-3810124IPR001164Arf GTPase activating protein
PRINTSPR004057.4E-202039IPR001164Arf GTPase activating protein
PRINTSPR004057.4E-203956IPR001164Arf GTPase activating protein
PRINTSPR004057.4E-206081IPR001164Arf GTPase activating protein
SuperFamilySSF495623.13E-28161256IPR000008C2 domain
CDDcd040381.39E-70164308No hitNo description
Gene3DG3DSA:2.60.40.1501.7E-29164317IPR000008C2 domain
PfamPF001681.1E-24165252IPR000008C2 domain
SMARTSM002391.3E-19166261IPR000008C2 domain
PROSITE profilePS5000416.376167246IPR000008C2 domain
PROSITE profilePS5129412.704368428IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-31370426IPR009057Homeodomain-like
SuperFamilySSF466892.15E-17370425IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-26372426IPR006447Myb domain, plants
PfamPF002495.5E-8373424IPR001005SANT/Myb domain
PfamPF143791.6E-11457493IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043547Biological Processpositive regulation of GTPase activity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005096Molecular FunctionGTPase activator activity
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MSTSRDKMRK LKELLHKSEN RICADCSAPD PKWASANIGV FICLKCSGIH RSLGTHISKV  60
LSVTLDEWTD DEINSILEVG GNSYANAIYE AFLPGGYHKP HPDSSQEERA DFIRSKYELQ  120
EFLKPSLRIV SNKSSLQAMD SRKDVGNASN SFSFKSEAGM VEFIGILKVK VIRGTKLAVR  180
DILSSDPYVV LTLGQQKAKT KVIKSNLNPV WNEVLTLSVP QKYGPLKLQV YDHDVLSRDD  240
IMGEAEVDLQ PMITAAMAFG DPGLLSDMQI GRWLMSRDNA LARDSAVSVV GGRVKQEVSL  300
RLQNVECGEV DLELEWIALN QGCQMYEPKP FSSIVPAHND PVSHNQQIER ISNNVVSNSG  360
GNSSNSNFAT RQRLRWTDDL HDRFVDAVTQ LGGPDRATPK GILRIMGVQG LTIYHVKSHL  420
QKYRLAKYIP DPTADGAKSD KKDLGDLLAD IESSSGMEIG EALQLQMEVQ RQLQLRIEAQ  480
GRYLQKIIEE QQRLSGVLGE SGKLTALGPA PGEQYQDSNK TDPSTPVPTS ESPIRDKAGS  540
GLFKTISSHD DCLSSGREPL TPDSSCRAGS PLESPRASKR IRVSGGIDHH GNDEFALPHK  600
VLEPSSGSNF RQESSVLLSS SAAHFDSLES LDVDENVFTN GSGSDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a52_A9e-411603171160CALCIUM-DEPENDENT LIPID-BINDING DOMAIN-CONTAINING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3248030.0HQ324803.1 Oryza sativa Japonica Group clone KCS268H02 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641014.10.0ADP-ribosylation factor GTPase-activating protein AGD12 isoform X1
RefseqXP_015641015.10.0ADP-ribosylation factor GTPase-activating protein AGD12 isoform X1
RefseqXP_015641016.10.0ADP-ribosylation factor GTPase-activating protein AGD12 isoform X1
RefseqXP_015641017.10.0ADP-ribosylation factor GTPase-activating protein AGD12 isoform X1
TrEMBLA0A0E0LDE80.0A0A0E0LDE8_ORYPU; Uncharacterized protein
STRINGOPUNC06G18860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-88G2-like family protein