PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G18940.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 448aa    MW: 46158.1 Da    PI: 7.6849
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G18940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.15.9e-89524452374
             GRAS   2 velLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      ++lLl+cA+ ++ gdl +a+++ +  ls  asp+gd   Rla +f++ALa r   +  +++       ++      +  a+ +f+++ P+l+f+
  OPUNC06G18940.1  52 RDLLLACADLLQRGDLPAARRAAEIvLSAAASPRGDGADRLAYHFARALALRADAKAGHVVVGGGGGVAA---RPASSGAYLAFNQIAPFLRFA 142
                      689****************99998625667***********************99666666544333333...4567788999*********** PP

             GRAS  95 hltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      hltaNqaIlea++ +        + +Hi+D+d+ +G+QWp+Llqa+a+R+    gpp++RiTg g+    ++++l +tg+rL+ fA+++++pf+
  OPUNC06G18940.1 143 HLTANQAILEAAAAAvdaggahrRVLHIVDLDAAHGVQWPPLLQAIAERAdpaLGPPEVRITGAGA----DRDTLLRTGNRLRAFARSIHLPFH 232
                      ***********998877888884455************************66666***********....9*********************** PP

             GRAS 178 fnvl.................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse... 251
                      f++l                 ++ ++++ ++  L+++p+E+laVn+vl lh+l   +++l+     +Lk vks++P vv+++e+ea  +++   
  OPUNC06G18940.1 233 FTPLllscatttphvagtstaATASTAAATTTGLELHPDETLAVNCVLFLHKLG-GDGELAA----FLKWVKSMNPAVVTIAEREAGGGAGggd 321
                      ****99999999988887764444666678999********************8.5666666....*******************988666678 PP

             GRAS 252 ...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                         ++ +r+  a+++ysa+f++lea++p+ s+er  vE+e+lgrei+ +v  +g +     +  e+W  + + aGF + pls +a++qa+lllr
  OPUNC06G18940.1 322 hidDLPRRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAAVGPSGGR---WWRGIERWGGAARGAGFVARPLSAFAVSQARLLLR 412
                      8889***********************************************99998...78899****************************** PP

             GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       ++ s+gy v+e +g+ +lgW++rpL+svSaW+
  OPUNC06G18940.1 413 LHYpSEGYLVQEARGACFLGWQTRPLLSVSAWQ 445
                      ********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.04225424IPR005202Transcription factor GRAS
PfamPF035142.0E-8652445IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MLRSLHSSSS SDTDNNSGGG GCKNNGGGGE AAVAGGGGCG DQRAVAAAPS TRDLLLACAD  60
LLQRGDLPAA RRAAEIVLSA AASPRGDGAD RLAYHFARAL ALRADAKAGH VVVGGGGGVA  120
ARPASSGAYL AFNQIAPFLR FAHLTANQAI LEAAAAAVDA GGAHRRVLHI VDLDAAHGVQ  180
WPPLLQAIAE RADPALGPPE VRITGAGADR DTLLRTGNRL RAFARSIHLP FHFTPLLLSC  240
ATTTPHVAGT STAATASTAA ATTTGLELHP DETLAVNCVL FLHKLGGDGE LAAFLKWVKS  300
MNPAVVTIAE REAGGGAGGG DHIDDLPRRV GVAMDHYSAV FEALEATVPP GSRERLAVEQ  360
EVLGREIEAA VGPSGGRWWR GIERWGGAAR GAGFVARPLS AFAVSQARLL LRLHYPSEGY  420
LVQEARGACF LGWQTRPLLS VSAWQPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-497344523375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0326280.0FJ032628.1 Oryza punctata clone a0082J04 subtilisin-like protease precursor, ZAC, MYB-CC type transfactor, calcium ion binding protein, Monoculm1, Mlo family protein, aspartic proteinase nepenthesin-1 precursor, microtubule-associated protein MAP65-1a, and IQ calmodulin-binding motif family protein genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179440.10.0protein MONOCULM 1-like
SwissprotQ84MM90.0MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A0E0LDF90.0A0A0E0LDF9_ORYPU; Uncharacterized protein
STRINGOPUNC06G18940.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-64GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]