PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G19020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 386aa    MW: 41677.3 Da    PI: 7.5101
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G19020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05216235120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  OPUNC06G19020.1 216 FSCPVCYKTFNRYNNMQMHM 235
                      89*****************9 PP
2zf-C2H214.10.00013300322123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  + + ++H +++
  OPUNC06G19020.1 300 FMCRKCGKAFAVRGDWRTHEKNC 322
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.67E-5212238No hitNo description
PROSITE profilePS501579.743216243IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-6216235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45216238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-6284320No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5296320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549300320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808300320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGDPYTNFLR GYHHHHHRSQ PLHFPPPPPP YASAAASSSF SGLYSSYLHP PPPPSSPPIR  60
EALPLLSLTP STTHPPHHHR HDQDHHHTQE QKNSLGHGAT SCSNDVEKEA AATADDQAAE  120
VTVALHIGLP SPSPSDAAAA ASAGGNQSAA AEASAGGGSS RMEEEGDEEE EEEAAAAAAA  180
TATLPLGCAS IGIGKLTKGQ YWIPTPSQIL IGPTQFSCPV CYKTFNRYNN MQMHMWGHGS  240
QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH YKRKHGIKPF  300
MCRKCGKAFA VRGDWRTHEK NCGKLWYCAC GSDFKHKRSL KDHIRAFGRG HAACGIDSFD  360
ADDLDDEPSS DLDHASASAA ATSRVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711040.0AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693889.11e-174PREDICTED: LOW QUALITY PROTEIN: zinc finger protein WIP2
SwissprotQ9SVY11e-127ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0E0LDH00.0A0A0E0LDH0_ORYPU; Uncharacterized protein
STRINGOPUNC06G19020.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-113C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]