PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G19090.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 315aa    MW: 33038 Da    PI: 8.2647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G19090.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-08155182431
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas 31 
                      +h+ +Er RR++iN ++e L+el+P +s
  OPUNC06G19090.2 155 SHSLAERARREKINARMELLKELVPGCS 182
                      8************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.42E-6149197No hitNo description
SuperFamilySSF474599.55E-10149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.408151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-9151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-6155182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0013157209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRHHSPPPPD LSAAGGEIQP PLIPVASASS NGGGSGSGSG GSFTALLGLP TSQAMELLLP  60
TSASASTPPP PPAFPADPHL VDRAARFSAF ASPSPPSPPP PPSSSSKRKA DPASKGKAAK  120
KGKTAASGEE GGGDGEDEKP AYVHVRARRG QATDSHSLAE RARREKINAR MELLKELVPG  180
CSKVSGTALV LDEIINHYLS MRLAAVNPRV DFGGLDNFLT TECGRITGLN YKNGMDLEQV  240
TWPDMGVHGA RNLMQLQQQF WHGDLAHPLQ PSSQWEKRTD TNPPVFSNSS SSLFGYDLAS  300
SGAPAQTGNK LKTEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709700.0AK070970.1 Oryza sativa Japonica Group cDNA clone:J023066J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641463.11e-145transcription factor bHLH48 isoform X2
SwissprotQ8VZ024e-52BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0E0LDI30.0A0A0E0LDI3_ORYPU; Uncharacterized protein
STRINGOPUNC06G19090.11e-163(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.25e-42bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]