PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G19180.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 301aa    MW: 30988.1 Da    PI: 9.993
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G19180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-073761226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k ++C  f+ t  C++G++C+F H 
  OPUNC06G19180.1 37 KLKPCTKFFSTSGCPFGSSCHFLHN 61
                     6689********************7 PP
2zf-CCCH20.11.2e-06103128227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  OPUNC06G19180.1 103 KTRMCNKYNTAEGCKWGSKCHFAHGE 128
                      89**********************96 PP
3zf-CCCH36.67.8e-12266291127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  OPUNC06G19180.1 266 FKTKLCENFNK-GSCTFGDRCHFAHGE 291
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.083562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7933563IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-53761IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-83761IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-63763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-1498133IPR000571Zinc finger, CCCH-type
SMARTSM003560.97101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-8101132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727101129IPR000571Zinc finger, CCCH-type
SMARTSM003221.5E-10171241IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.5E-15172240IPR004088K Homology domain, type 1
PROSITE profilePS5008414.802172236IPR004088K Homology domain, type 1
PfamPF000135.8E-11174237IPR004088K Homology domain, type 1
SuperFamilySSF547913.65E-15174266IPR004088K Homology domain, type 1
CDDcd001052.69E-13174236No hitNo description
Gene3DG3DSA:4.10.1000.102.5E-17263298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131265292IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7265291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-9265296IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9266291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEAGGGKRAA APEGTNGAAA AKRARASESS QVGVGSKLKP CTKFFSTSGC PFGSSCHFLH  60
NFPGGYQAAA KMTSYGGTAV ATPPGRMPLG PGAPSGPPTS SVKTRMCNKY NTAEGCKWGS  120
KCHFAHGERE LGKPMLLDNS MPHPMGSMPN GHFEAPPMPG PDVVPPSTFG ASATAKISVD  180
ASLAGGIIGK GGTNTKHISR MTGAKLAIRD NESNPNLKNI ELEGTFDQIK HASAMVTELI  240
VRISGNAPPA KNPGRGSHAG GPGSNFKTKL CENFNKGSCT FGDRCHFAHG ESELRKPPAA  300
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036090.0AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641069.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ30.0C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0E0LDJ60.0A0A0E0LDJ6_ORYPU; Uncharacterized protein
STRINGOPUNC06G19180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-45C3H family protein