PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G19380.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 379aa MW: 40129 Da PI: 4.7037

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G19380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36	1.5e-11	214	270	4	60
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +k+ rr ++NR +A +sR+RKk++++ Le+k+k Leae ++L l+ + e +l+ OPUNC06G19380.1 214 SKKKRRQMRNRDSAMKSRERKKMYVKDLETKSKYLEAECRRLSYALQCCTAENMALR 270 79**************************************99988877666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	210	275	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-13	210	274	No hit	No description
PROSITE profile	PS50217	9.829	213	276	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-10	214	271	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.25E-11	215	273	No hit	No description
CDD	cd14704	2.00E-15	216	267	No hit	No description
PROSITE pattern	PS00036	0	218	233	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MAHSSPPIGQ ATAPPRVGPT SSLPRTSSSS SSSFLPKQIR TSPPYIKSPT SGNRAKNISI 60 AISMDVDAAV VAGDAEFFAD LDLDALLASF SAAAAADSGV SGLFAPSPPP DDAEAGSPES 120 VSSRRASPAR EAALSEIERF LMEEGPAAEG VGEEDFFDSL LVDGVEEVEE EEEGKGSEAG 180 GSTDGDSGKE NEVATPDAAK EDVDAEVDGD DPMSKKKRRQ MRNRDSAMKS RERKKMYVKD 240 LETKSKYLEA ECRRLSYALQ CCTAENMALR QSLLKDRPVG AATAMQESAV LTETLPLVSL 300 LWLVSIVCLL LMPGLPNRNP VARSSAGRDL VTVTGKKTSS EQQLETLELL LHGRRCKGSR 360 ARIKLDAGPF HAAAAAAAC

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MAHSSPPIGQ ATAPPRVGPT SSLPRTSSSS SSSFLPKQIR TSPPYIKSPT SGNRAKNISI  60
AISMDVDAAV VAGDAEFFAD LDLDALLASF SAAAAADSGV SGLFAPSPPP DDAEAGSPES  120
VSSRRASPAR EAALSEIERF LMEEGPAAEG VGEEDFFDSL LVDGVEEVEE EEEGKGSEAG  180
GSTDGDSGKE NEVATPDAAK EDVDAEVDGD DPMSKKKRRQ MRNRDSAMKS RERKKMYVKD  240
LETKSKYLEA ECRRLSYALQ CCTAENMALR QSLLKDRPVG AATAMQESAV LTETLPLVSL  300
LWLVSIVCLL LMPGLPNRNP VARSSAGRDL VTVTGKKTSS EQQLETLELL LHGRRCKGSR  360
ARIKLDAGPF HAAAAAAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	218	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00019	PBM	Transfer from AT1G42990	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107021	0.0	AK107021.1 Oryza sativa Japonica Group cDNA clone:002-121-A01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641141.1	1e-151	bZIP transcription factor 50
Swissprot	Q69XV0	1e-152	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A0E0LDM0	0.0	A0A0E0LDM0_ORYPU; Uncharacterized protein
STRING	OPUNC06G19380.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	6e-12	basic region/leucine zipper motif 60

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]