PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G19920.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 2068aa    MW: 227090 Da    PI: 7.3437
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G19920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-0519391960627
                       -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                       C+ f +tG+C+ G+rCk +H++
  OPUNC06G19920.1 1939 CPVFEATGECPQGSRCKLHHPK 1960
                       *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.03718291858IPR000571Zinc finger, CCCH-type
SMARTSM003561.218291857IPR000571Zinc finger, CCCH-type
SMARTSM003561418581882IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.85918621883IPR000571Zinc finger, CCCH-type
SMARTSM003560.009418841909IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.23518841910IPR000571Zinc finger, CCCH-type
SMARTSM003560.001419111937IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67119111938IPR000571Zinc finger, CCCH-type
SMARTSM003561.119381960IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.43719391961IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2068 aa     Download sequence    Send to blast
MDPPPPFDHP LHRRGGGGHH HHFPGGSGSS GGAASAAARS RYEYGGGGSG GYEPNPHLQY  60
HLPDHHSHHH HPPPRVHHHH HQPPAPTPPP PPPPPLPQHR LEPPPPHYSF PPRGHPDAYS  120
PPPYHDPSPH HHYHRHGGDD FLPADEIRRV GGHHHHHHHH HHHPQLQQLL PWEEAEEERR  180
RYGATQQLRL SPSGSWKRQR CAVHDADVES TSSSGPPPRR QRQQPHPDYA LDDSFVDRNN  240
AHPGYMGHEG FSIHSDSKVS RKIQMPTQMA LPGSPHGTSA GYSRRAPQKV APSRVSVWHR  300
IEENPAMYEP SSPPSHMPKE VHVSPCKSNN VVPASKELAS VISVDCRGKS ADGNDGDSNT  360
GTKKNPVKKN EKVLASVLVK PSMEPKEKEV AAKKMLKKPD KVQKKAVDSN IRSLVSTPCP  420
GAGVKKVKKI VIKKIVRKIN GKGNQISSPI VSEKRDSIDA NACEKEEGEI TTSSFEKDAI  480
SAHDPIAVSD TAGFGNGVND QKEKNTIFTN PSGRNAASVI GSTEIPVPTN GSGSAHPGKE  540
EVRSPKNPVD NNNAALIVEP IEVLEKSGTE YPRKEHDMSS IGSSVNDAFA DENNHTQKEV  600
KIPILSGEMN VAVVINSVRV SDARELPRCD DSSMEESKVP KDVDANNAVC VDGVASNCDT  660
PEVCGNEDAR RECGKNLIGI NDENAFLLNN CTRSSSTADT CMTAVEGAQK KEGIILTGSS  720
EKSICFLDDS VGIRMTTEFG ASKDAPNERD DIPSHPSEKD FMSLNTSVGL NYTEVSEKED  780
IQEKVDRIPM ESIVACTSSG NEDIQVSEGR KPMELSEANV FSGSEDIQGK ECRIPMGSSE  840
TNTSSVNHVN ASNEKDVSLS VDTQKKESHR PIESCKNTTS EIMHHEEAPS TEEVITGMSL  900
GRKVAEGPAR SNERCSGAIG SYSANTLKFG LVCATEENQM EDLLNDRTAL NETDDPLHAE  960
DSSAYVLPSS RNVVSTYASP LYDPMEDSTS DGILNIGFGR NAISKAAELL DLHRDHMSFE  1020
NDSLIHSRGS PSVSGNCEQS VPTALTLGSN IYFSTAETDD QPEESHELVV EGQRGLTVET  1080
ARKLDSPGKI EVLNSEGLIS TGIQNWLSLP PSINSMEMSG QFLNNGFTVS KGRLGLMSQD  1140
HDITQDMDQC GSEDAFFSQD HSIRLCGSDL PHSHLLAPKE STMNGEDQSG IVLTGLHATS  1200
SVNVLGHHDD QTDDIPVDNL NKPPSALESS DAMDADQVSS QVCVDPDQTN DSNIENPGVE  1260
SNAKQDLLSS WIEAIVSEAK KEHLPCKSTP HAVCLPDKLL EPKDGNRKTV LETVVPSAVK  1320
SPQINFASST LQKVAPKQIT LPSSSREPTR ANQNARHRTW HRGNIASSSS SLHASQPLGL  1380
PPKLPPKKND KAQNSYIRKG NALIRNPSNG NHPHSSTSQD TQNKLNKPVA RRSMNFVRKA  1440
DTKDLANSNI SVERPKTPPL PLHTKSISCP TTLLEPLSQT LQKQHGHEAE KEDPIRQPKS  1500
GVDNSSIKSA QKSEPSDPSK VVYVRPKSNQ LVAAQRQHPV DLVNSSTDKI LSLQAPVASD  1560
LYLKKRKNQI VLSSCSPSDG LSTKEMLPAE NSNSDEIKDL MIACSISGIP GVKDTPQKAL  1620
QTTNSVGRFS HVWTLNGQQP QRKGFMGNSH MNALPRILPW KRKIFCKNFR SSHNTLSNMS  1680
SIRIVRKLLQ TRKRDMIYTV STDGFSLRKS GVLSVGGSSL KWSRSLEKRS QKVNMEATLA  1740
LAEVERRKRE KRKRQSLHDK GDHQFESVTG NQLRNNHQSA SDLRKPLTCN EYVRVSKGNQ  1800
LVRNPKNVIR MLASDKVRWS LHTVRSRLAK KQQYCQFFTR FGECKKPMGK CPYIHDRAKV  1860
TICTKFLKGL CSNTSCKLTH KVLPERMPDC SYFLRGLCTN IACPYRHVKV NLNAPVCEDF  1920
LKGYCADGDE CHKKHSYVCP VFEATGECPQ GSRCKLHHPK SKVKSKSRRP DFLQNSSWGR  1980
YFDASIDHQD ETRKVSLDED EREKPQRVFS DGDLGFISLD GDADEDVAAL DASADIPLME  2040
LDSGDLSAQT DNLDALIKPL RIMRTARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C4e-151835196041168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C4e-151835196041168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117451750RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035730.0AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643043.10.0uncharacterized protein LOC4341610 isoform X2
TrEMBLA0A0E0LDT30.0A0A0E0LDT3_ORYPU; Uncharacterized protein
STRINGOPUNC06G19920.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67031010