PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G21840.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27167.8 Da    PI: 5.2259
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G21840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.5e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krie+ ++rqv+fskRr+g+lKKA+EL vLCda+v v++fs +gkl++++s
  OPUNC06G21840.1  9 KRIEDATRRQVSFSKRRAGLLKKAHELAVLCDAQVGVVVFSDKGKLFDFCS 59
                     79***********************************************96 PP
2K-box55.52.4e-1983171995
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslke..LqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                      +++++ e++  e+++L++e+++L+ ++R+  GedL+     +  L qL+ qLe++l+k+R++K+el+++q+e+++++++ ++e+n+ L 
  OPUNC06G21840.1  83 KANRDDEQMLMEITRLRSENDQLEASLRRQTGEDLSCVATVDdgLSQLQLQLESALSKVRERKDELMRQQLEDMRRMQQTVHEQNNFLC 171
                      4566778999***************************9987667******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.74161IPR002100Transcription factor, MADS-box
CDDcd002652.58E-39272No hitNo description
SuperFamilySSF554552.49E-28275IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1786173IPR002487Transcription factor, K-box
PROSITE profilePS5129712.888180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIEIKR IEDATRRQVS FSKRRAGLLK KAHELAVLCD AQVGVVVFSD KGKLFDFCSK  60
PVSLMELIHR YEITTAGNNR LQKANRDDEQ MLMEITRLRS ENDQLEASLR RQTGEDLSCV  120
ATVDDGLSQL QLQLESALSK VRERKDELMR QQLEDMRRMQ QTVHEQNNFL CLMMSENWTS  180
PASGEASAME ALTVLPAATA AAEAEAFGHN CFFPEEEGVA ASSTALQLWP HDGDQPNLRL  240
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-16159159MEF2C
5f28_B1e-16159159MEF2C
5f28_C1e-16159159MEF2C
5f28_D1e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1740930.0AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882176.18e-96MADS-box transcription factor 30 isoform X6
RefseqXP_025882177.14e-97MADS-box transcription factor 30 isoform X7
SwissprotQ655V41e-98MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A0E0LEG21e-178A0A0E0LEG2_ORYPU; Uncharacterized protein
STRINGOPUNC06G21840.11e-179(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-40MIKC_MADS family protein