PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G22490.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 424aa    MW: 45287.6 Da    PI: 6.379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G22490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-172168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l
  OPUNC06G22490.1 21 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 68
                     79******************************************9986 PP
2Myb_DNA-binding46.67.7e-1574117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E+ l+++++ +lG++ W++I+++++ gRt++++k++w++
  OPUNC06G22490.1  74 KGPFSPDEERLILRLHGLLGNK-WARISSYLN-GRTDNEIKNYWNT 117
                      79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0751668IPR017930Myb domain
SuperFamilySSF466892.51E-3018115IPR009057Homeodomain-like
SMARTSM007171.6E-132070IPR001005SANT/Myb domain
PfamPF002496.8E-152168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-222275IPR009057Homeodomain-like
CDDcd001678.71E-122368No hitNo description
PROSITE patternPS0017503645IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.21469123IPR017930Myb domain
SMARTSM007173.0E-1573121IPR001005SANT/Myb domain
PfamPF002493.1E-1474117IPR001005SANT/Myb domain
CDDcd001675.13E-1176119No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2376123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MARSGNGGGE GGGGGGGGLK KGPWTQAEDK LLVDHVRRHG EGNWNAVRRE TGLQRCGKSC  60
RLRWANHLRP DLRKGPFSPD EERLILRLHG LLGNKWARIS SYLNGRTDNE IKNYWNTRLK  120
RRVRAGLTPY PPEIEREIAH LRAQNLNLSA ADGSGGLTTP PLLLDPSNPF ALPAPVMAPS  180
PSASQSNSPL INQNYPLLNQ MQGLQLLHVA NQQPPPPPQQ QPAFHHDGGA GLGGGFVSSG  240
LPPLPTRPRE LPPNQFETAT SGGGGGDGLL ESLLLGDDHL LPRSNPSMLR VGSMPELMYR  300
EPSSSLLLHG GASDSDVTSQ CPPGEEDQHY GGRWDFIFED VKPSKRRAAS AVEEEISGMF  360
GIAPGSIPGE WFSPGGGGAA GAGSSAASPG PSSVVTTDDD FTLEMQQIMS SLPLLEPEEH  420
NWNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-291912325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123RLKRRVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116970.0AK111697.1 Oryza sativa Japonica Group cDNA clone:J023004F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641592.10.0uncharacterized protein LOC4341850
TrEMBLA0A0E0LEP50.0A0A0E0LEP5_ORYPU; Uncharacterized protein
STRINGOPUNC06G22490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.23e-57myb domain protein 101