PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G23700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 248aa    MW: 27119.5 Da    PI: 9.4629
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G23700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.7e-18103157256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++l+L+ rqV vWFqNrRa+ k
  OPUNC06G23700.1 103 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTK 157
                      778899***********************************************98 PP
2HD-ZIP_I/II116.71.4e-37103191190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk++l+keq++lLE+sF+ ++ L++ +K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l++en++L++e  eLr +
  OPUNC06G23700.1 103 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTDENKQLKHELIELR-R 191
                      69************************************************************************************99.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1890160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-1894158IPR009057Homeodomain-like
PROSITE profilePS5007117.03899159IPR001356Homeobox domain
SMARTSM003892.4E-13101163IPR001356Homeobox domain
CDDcd000865.65E-13103160No hitNo description
PfamPF000463.2E-15103157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PfamPF021837.2E-9159191IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.2E-16159202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEGEDLGAWL GLGIGGGYAY GGDDRRSPSS PSPVQMFSQH VKEEMTRGYD HGRDDEQASG  60
SKIMKGERGA RLRMMRSIRN GVDGSRSRVL SLGDGGSDGG GTRKKLQLTK EQSTLLEDSF  120
RVHNILSHAQ KHELARQLKL KPRQVEVWFQ NRRARTKLKQ TEVDCEFLRR CCENLTDENK  180
QLKHELIELR RLASAAAAAA AAGSQLYVQF PRAAAAAMVN VCPSCEKVTV MSGGGDGETG  240
KSSSSYSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054451e-108AP005445.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0028E05.
GenBankAP0149621e-108AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643687.11e-123homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F61e-124HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A0E0LF450.0A0A0E0LF45_ORYPU; Uncharacterized protein
STRINGOPUNC06G23700.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-45homeobox from Arabidopsis thaliana