PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G24380.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 653aa MW: 70843.2 Da PI: 7.8462

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G24380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.8e-10	192	213	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e Cr+f+r G CkyG++C++ H OPUNC06G24380.1 192 QEVCRNFQR-GSCKYGAQCRYLH 213 799****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	16.718	189	216	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.5E-8	189	215	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.51E-5	189	214	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-7	192	213	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.5E-7	193	213	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MLEKVSGCGG GVERIAASAS ATTAGAAARA KPPPFILSVS VSDEAPTHAI CGCVAGAAPL 60 CCCWVCWCWE RALWTGSIWA GPTQRTPLSW AEPPAARLAH WLLAVTASEK GGGEGVRLRR 120 RPRLELSTEA ATRGKLGQPT LISWRWKEEE EEEEGSSACG GRRGGWEALN PRAGALESNP 180 PSFRFAAMSR RQEVCRNFQR GSCKYGAQCR YLHASPHQQQ QQQQQQQQQQ QQQQQKPNPF 240 GFGVQGGNAQ SRNAPGPAKP FQNKWVRDPS AQTKQAEAAQ PPQVQAAHTS CEDPQSCRQQ 300 ISEDFKNEAP IWKLTCYAHL RSGPCDIKGD ISFEELRAKA YEEGKQGHSL QSIVEGERNL 360 QNTKLMEFTN LINSARPSQT PSFPTMSSFP EVKNNSSFGA SQTNGPPVFS SFSQIGAATN 420 IGPGPGTTTP GMPASSPFGH PSSAPLATPT FGSSQMKFGV SSVFGNQGSG QSFGNFQAPR 480 FPSSKSPASS VQHRDIDRQS QELLNGMVTL PSVMSEASVG NNKNENQDDS IWLKEKWAIG 540 EIPLDEPPQR HWTLILAAML QLHDDTKEFE PTSPAAAGPG DYKFVCSISS GRSALLLPIR 600 LRSDDPDVPF DSPDMETNRA IRLNKIILET NSLKLNVKRS LTSVDYDLSC LGP

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MLEKVSGCGG GVERIAASAS ATTAGAAARA KPPPFILSVS VSDEAPTHAI CGCVAGAAPL  60
CCCWVCWCWE RALWTGSIWA GPTQRTPLSW AEPPAARLAH WLLAVTASEK GGGEGVRLRR  120
RPRLELSTEA ATRGKLGQPT LISWRWKEEE EEEEGSSACG GRRGGWEALN PRAGALESNP  180
PSFRFAAMSR RQEVCRNFQR GSCKYGAQCR YLHASPHQQQ QQQQQQQQQQ QQQQQKPNPF  240
GFGVQGGNAQ SRNAPGPAKP FQNKWVRDPS AQTKQAEAAQ PPQVQAAHTS CEDPQSCRQQ  300
ISEDFKNEAP IWKLTCYAHL RSGPCDIKGD ISFEELRAKA YEEGKQGHSL QSIVEGERNL  360
QNTKLMEFTN LINSARPSQT PSFPTMSSFP EVKNNSSFGA SQTNGPPVFS SFSQIGAATN  420
IGPGPGTTTP GMPASSPFGH PSSAPLATPT FGSSQMKFGV SSVFGNQGSG QSFGNFQAPR  480
FPSSKSPASS VQHRDIDRQS QELLNGMVTL PSVMSEASVG NNKNENQDDS IWLKEKWAIG  540
EIPLDEPPQR HWTLILAAML QLHDDTKEFE PTSPAAAGPG DYKFVCSISS GRSALLLPIR  600
LRSDDPDVPF DSPDMETNRA IRLNKIILET NSLKLNVKRS LTSVDYDLSC LGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	122	RLRRRPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269\|PubMed:18953406, ECO:0000269\|PubMed:22570626}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269\|PubMed:18953406, ECO:0000269\|PubMed:22570626}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107008	0.0	AK107008.1 Oryza sativa Japonica Group cDNA clone:002-120-E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641399.1	0.0	zinc finger CCCH domain-containing protein 46
Swissprot	Q5Z807	0.0	C3H46_ORYSJ; Zinc finger CCCH domain-containing protein 46
TrEMBL	A0A0E0LFD5	0.0	A0A0E0LFD5_ORYPU; Uncharacterized protein
STRING	OPUNC06G24380.2	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	4e-49	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]